This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2qyb

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (04:09, 2 July 2021) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2qyb.jpg|left|200px]]
 
-
{{Structure
+
==Crystal structure of the GAF domain region of putative membrane protein from Geobacter sulfurreducens PCA==
-
|PDB= 2qyb |SIZE=350|CAPTION= <scene name='initialview01'>2qyb</scene>, resolution 2.40&Aring;
+
<StructureSection load='2qyb' size='340' side='right'caption='[[2qyb]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[2qyb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Geosl Geosl]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QYB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QYB FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|GENE= GSU1429 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243231 Geobacter sulfurreducens PCA])
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GSU1429 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243231 GEOSL])</td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qyb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qyb OCA], [https://pdbe.org/2qyb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qyb RCSB], [https://www.ebi.ac.uk/pdbsum/2qyb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qyb ProSAT], [https://www.topsan.org/Proteins/MCSG/2qyb TOPSAN]</span></td></tr>
-
 
+
</table>
-
'''Crystal structure of the GAF domain region of putative membrane protein from Geobacter sulfurreducens PCA'''
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
2QYB is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Geobacter_sulfurreducens_pca Geobacter sulfurreducens pca]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QYB OCA].
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qy/2qyb_consurf.spt"</scriptWhenChecked>
-
[[Category: Geobacter sulfurreducens pca]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Single protein]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Clancy, S.]]
+
</jmolCheckbox>
-
[[Category: Duggan, E.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qyb ConSurf].
-
[[Category: Joachimiak, A.]]
+
<div style="clear:both"></div>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
__TOC__
-
[[Category: Nocek, B.]]
+
</StructureSection>
-
[[Category: domain of putative membrane protein]]
+
[[Category: Geosl]]
-
[[Category: gaf domain]]
+
[[Category: Large Structures]]
-
[[Category: mcsg]]
+
[[Category: Clancy, S]]
-
[[Category: midwest center for structural genomic]]
+
[[Category: Duggan, E]]
-
[[Category: protein structure initiative]]
+
[[Category: Joachimiak, A]]
-
[[Category: psi-2]]
+
[[Category: Structural genomic]]
-
[[Category: structural genomic]]
+
[[Category: Nocek, B]]
-
 
+
[[Category: Domain of putative membrane protein]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 18:30:53 2008''
+
[[Category: Gaf domain]]
 +
[[Category: Mcsg]]
 +
[[Category: Membrane protein]]
 +
[[Category: PSI, Protein structure initiative]]

Current revision

Crystal structure of the GAF domain region of putative membrane protein from Geobacter sulfurreducens PCA

PDB ID 2qyb

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools