This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2r39
From Proteopedia
(Difference between revisions)
| (10 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2r39.jpg|left|200px]] | ||
| - | + | ==Crystal structure of FixG-related protein from Vibrio parahaemolyticus== | |
| - | + | <StructureSection load='2r39' size='340' side='right'caption='[[2r39]], [[Resolution|resolution]] 2.02Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | | | + | <table><tr><td colspan='2'>[[2r39]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibpa Vibpa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R39 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R39 FirstGlance]. <br> |
| - | + | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
| - | | | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VP3052 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=223926 VIBPA])</td></tr> |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r39 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r39 OCA], [https://pdbe.org/2r39 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r39 RCSB], [https://www.ebi.ac.uk/pdbsum/2r39 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r39 ProSAT], [https://www.topsan.org/Proteins/MCSG/2r39 TOPSAN]</span></td></tr> | |
| - | + | </table> | |
| - | + | == Evolutionary Conservation == | |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | + | Check<jmol> | |
| - | + | <jmolCheckbox> | |
| - | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r3/2r39_consurf.spt"</scriptWhenChecked> | |
| - | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |
| - | == | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | + | </jmolCheckbox> | |
| - | [[Category: | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2r39 ConSurf]. |
| - | [[Category: | + | <div style="clear:both"></div> |
| - | [[Category: Abdullah, J | + | __TOC__ |
| - | [[Category: Bigelow, L | + | </StructureSection> |
| - | [[Category: Chang, C | + | [[Category: Large Structures]] |
| - | [[Category: Joachimiak, A | + | [[Category: Vibpa]] |
| - | [[Category: | + | [[Category: Abdullah, J]] |
| - | [[Category: | + | [[Category: Bigelow, L]] |
| - | + | [[Category: Chang, C]] | |
| - | [[Category: | + | [[Category: Joachimiak, A]] |
| - | [[Category: | + | [[Category: Structural genomic]] |
| - | [[Category: | + | [[Category: Fixg-related protein]] |
| - | [[Category: | + | [[Category: Iron]] |
| - | [[Category: | + | [[Category: Iron-sulfur]] |
| - | + | [[Category: Mcsg]] | |
| - | [[Category: | + | [[Category: Metal-binding]] |
| - | + | [[Category: PSI, Protein structure initiative]] | |
| - | + | [[Category: Unknown function]] | |
| - | [[Category: | + | [[Category: Vibrio parahaemolyticus]] |
| - | + | ||
| - | + | ||
Current revision
Crystal structure of FixG-related protein from Vibrio parahaemolyticus
| |||||||||||
