This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2r48

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (04:13, 2 July 2021) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2r48.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of the fructose specific IIB subunit of PTS system from Bacillus subtilis subsp. subtilis str. 168==
-
The line below this paragraph, containing "STRUCTURE_2r48", creates the "Structure Box" on the page.
+
<StructureSection load='2r48' size='340' side='right'caption='[[2r48]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2r48]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacsu Bacsu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R48 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R48 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
-->
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">manP, BSU12010 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224308 BACSU])</td></tr>
-
{{STRUCTURE_2r48| PDB=2r48 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r48 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r48 OCA], [https://pdbe.org/2r48 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r48 RCSB], [https://www.ebi.ac.uk/pdbsum/2r48 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r48 ProSAT], [https://www.topsan.org/Proteins/MCSG/2r48 TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[[https://www.uniprot.org/uniprot/PTN3B_BACSU PTN3B_BACSU]] The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. This system is involved in mannose transport.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r4/2r48_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2r48 ConSurf].
 +
<div style="clear:both"></div>
-
'''Crystal structure of the fructose specific IIB subunit of PTS system from Bacillus subtilis subsp. subtilis str. 168'''
+
==See Also==
-
 
+
*[[Phosphotransferase 3D structures|Phosphotransferase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
2R48 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._subtilis_str._168 Bacillus subtilis subsp. subtilis str. 168]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R48 OCA].
+
[[Category: Bacsu]]
-
[[Category: Bacillus subtilis subsp. subtilis str. 168]]
+
[[Category: Large Structures]]
-
[[Category: Single protein]]
+
[[Category: Clancy, S]]
-
[[Category: Clancy, S.]]
+
[[Category: Cuff, M]]
-
[[Category: Cuff, M.]]
+
[[Category: Joachimiak, A]]
-
[[Category: Joachimiak, A.]]
+
[[Category: Structural genomic]]
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Category: Nocek, B]]
-
[[Category: Nocek, B.]]
+
[[Category: Sather, A]]
-
[[Category: Sather, A.]]
+
[[Category: Fructose specific iib subunit]]
[[Category: Fructose specific iib subunit]]
[[Category: Mcsg]]
[[Category: Mcsg]]
[[Category: Membrane]]
[[Category: Membrane]]
-
[[Category: Midwest center for structural genomic]]
 
[[Category: Pfam02379]]
[[Category: Pfam02379]]
[[Category: Phosphotransferase system]]
[[Category: Phosphotransferase system]]
-
[[Category: Protein structure initiative]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Psi-2]]
+
[[Category: Pts system]]
[[Category: Pts system]]
-
[[Category: Structural genomic]]
 
[[Category: Sugar transport]]
[[Category: Sugar transport]]
[[Category: Transferase]]
[[Category: Transferase]]
Line 37: Line 45:
[[Category: Transport]]
[[Category: Transport]]
[[Category: Transport protein]]
[[Category: Transport protein]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 16:13:14 2008''
 

Current revision

Crystal structure of the fructose specific IIB subunit of PTS system from Bacillus subtilis subsp. subtilis str. 168

PDB ID 2r48

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools