This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2r4q

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (04:14, 2 July 2021) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2r4q.jpg|left|200px]]
 
-
{{Structure
+
==The structure of a domain of fruA from Bacillus subtilis==
-
|PDB= 2r4q |SIZE=350|CAPTION= <scene name='initialview01'>2r4q</scene>, resolution 1.600&Aring;
+
<StructureSection load='2r4q' size='340' side='right'caption='[[2r4q]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
+
<table><tr><td colspan='2'>[[2r4q]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacsu Bacsu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R4Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R4Q FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|GENE= fruA, BSU14400 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224308 Bacillus subtilis subsp. subtilis str. 168])
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">fruA, BSU14400 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224308 BACSU])</td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam02379 PTS_IIB_fruc]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r4q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r4q OCA], [https://pdbe.org/2r4q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r4q RCSB], [https://www.ebi.ac.uk/pdbsum/2r4q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r4q ProSAT], [https://www.topsan.org/Proteins/MCSG/2r4q TOPSAN]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2r4q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r4q OCA], [http://www.ebi.ac.uk/pdbsum/2r4q PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2r4q RCSB]</span>
+
== Function ==
-
}}
+
[[https://www.uniprot.org/uniprot/PTF3A_BACSU PTF3A_BACSU]] The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. This system is involved in fructose transport (By similarity).
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r4/2r4q_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2r4q ConSurf].
 +
<div style="clear:both"></div>
-
'''The structure of a domain of fruA from Bacillus subtilis'''
+
==See Also==
-
 
+
*[[Phosphotransferase 3D structures|Phosphotransferase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
2R4Q is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._subtilis_str._168 Bacillus subtilis subsp. subtilis str. 168]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R4Q OCA].
+
[[Category: Bacsu]]
-
[[Category: Bacillus subtilis subsp. subtilis str. 168]]
+
[[Category: Large Structures]]
-
[[Category: Single protein]]
+
[[Category: Clancy, S]]
-
[[Category: Clancy, S.]]
+
[[Category: Cuff, M E]]
-
[[Category: Cuff, M E.]]
+
[[Category: Joachimiak, A]]
-
[[Category: Joachimiak, A.]]
+
[[Category: Structural genomic]]
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Category: Nocek, B]]
-
[[Category: Nocek, B.]]
+
[[Category: Sather, A]]
-
[[Category: Sather, A.]]
+
[[Category: Fructose specific iib subunit]]
-
[[Category: fructose specific iib subunit]]
+
[[Category: Mcsg]]
-
[[Category: mcsg]]
+
[[Category: Membrane]]
-
[[Category: membrane]]
+
[[Category: Pfam02379]]
-
[[Category: midwest center for structural genomic]]
+
[[Category: Phosphotransferase system]]
-
[[Category: pfam02379]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: phosphotransferase system]]
+
[[Category: Sugar transport]]
-
[[Category: protein structure initiative]]
+
[[Category: Transferase]]
-
[[Category: psi-2]]
+
[[Category: Transmembrane]]
-
[[Category: structural genomic]]
+
[[Category: Transport]]
-
[[Category: sugar transport]]
+
[[Category: Transport protein]]
-
[[Category: transferase]]
+
-
[[Category: transmembrane]]
+
-
[[Category: transport]]
+
-
[[Category: transport protein]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:56:28 2008''
+

Current revision

The structure of a domain of fruA from Bacillus subtilis

PDB ID 2r4q

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools