This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2r6i

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="2r6i" size="350" color="white" frame="true" align="right" spinBox="true" caption="2r6i, resolution 2.59&Aring;" /> '''Crystal structure of...)
Current revision (04:16, 2 July 2021) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2r6i.jpg|left|200px]]<br /><applet load="2r6i" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2r6i, resolution 2.59&Aring;" />
 
-
'''Crystal structure of Atu1473 protein, a putative chaperone from Agrobacterium tumefaciens'''<br />
 
-
==About this Structure==
+
==Crystal structure of Atu1473 protein, a putative chaperone from Agrobacterium tumefaciens==
-
2R6I is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens_str._c58 Agrobacterium tumefaciens str. c58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R6I OCA].
+
<StructureSection load='2r6i' size='340' side='right'caption='[[2r6i]], [[Resolution|resolution]] 2.59&Aring;' scene=''>
-
[[Category: Agrobacterium tumefaciens str. c58]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[2r6i]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrfc Agrfc]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R6I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R6I FirstGlance]. <br>
-
[[Category: Edwards, A.M.]]
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[Category: Joachimiak, A.]]
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Atu1473, AGR_C_2717 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176299 AGRFC])</td></tr>
-
[[Category: MCSG, Midwest.Center.for.Structural.Genomics.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r6i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r6i OCA], [https://pdbe.org/2r6i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r6i RCSB], [https://www.ebi.ac.uk/pdbsum/2r6i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r6i ProSAT], [https://www.topsan.org/Proteins/MCSG/2r6i TOPSAN]</span></td></tr>
-
[[Category: Osipiuk, J.]]
+
</table>
-
[[Category: Savchenko, A.]]
+
== Evolutionary Conservation ==
-
[[Category: Xu, X.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Zheng, H.]]
+
Check<jmol>
-
[[Category: apc6123]]
+
<jmolCheckbox>
-
[[Category: chaperone]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r6/2r6i_consurf.spt"</scriptWhenChecked>
-
[[Category: mcsg]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: midwest center for structural genomics]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: protein structure initiative]]
+
</jmolCheckbox>
-
[[Category: psi-2]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2r6i ConSurf].
-
[[Category: structural genomics]]
+
<div style="clear:both"></div>
-
 
+
__TOC__
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 13:36:10 2008''
+
</StructureSection>
 +
[[Category: Agrfc]]
 +
[[Category: Large Structures]]
 +
[[Category: Edwards, A M]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Structural genomic]]
 +
[[Category: Osipiuk, J]]
 +
[[Category: Savchenko, A]]
 +
[[Category: Xu, X]]
 +
[[Category: Zheng, H]]
 +
[[Category: Apc6123]]
 +
[[Category: Chaperone]]
 +
[[Category: Mcsg]]
 +
[[Category: PSI, Protein structure initiative]]

Current revision

Crystal structure of Atu1473 protein, a putative chaperone from Agrobacterium tumefaciens

PDB ID 2r6i

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools