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2r8r

From Proteopedia

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{{Seed}}
 
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[[Image:2r8r.png|left|200px]]
 
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==Crystal structure of the N-terminal region (19..243) of sensor protein KdpD from Pseudomonas syringae pv. tomato str. DC3000==
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The line below this paragraph, containing "STRUCTURE_2r8r", creates the "Structure Box" on the page.
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<StructureSection load='2r8r' size='340' side='right'caption='[[2r8r]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2r8r]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Psesm Psesm]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R8R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R8R FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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-->
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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{{STRUCTURE_2r8r| PDB=2r8r | SCENE= }}
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">kdpD, PSPTO_2245 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=223283 PSESM])</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Histidine_kinase Histidine kinase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.13.3 2.7.13.3] </span></td></tr>
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===Crystal structure of the N-terminal region (19..243) of sensor protein KdpD from Pseudomonas syringae pv. tomato str. DC3000===
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r8r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r8r OCA], [https://pdbe.org/2r8r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r8r RCSB], [https://www.ebi.ac.uk/pdbsum/2r8r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r8r ProSAT], [https://www.topsan.org/Proteins/MCSG/2r8r TOPSAN]</span></td></tr>
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</table>
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== Evolutionary Conservation ==
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==About this Structure==
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[[Image:Consurf_key_small.gif|200px|right]]
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2R8R is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Pseudomonas_syringae_pv._tomato_str._dc3000 Pseudomonas syringae pv. tomato str. dc3000]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R8R OCA].
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r8/2r8r_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2r8r ConSurf].
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<div style="clear:both"></div>
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__TOC__
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</StructureSection>
[[Category: Histidine kinase]]
[[Category: Histidine kinase]]
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[[Category: Pseudomonas syringae pv. tomato str. dc3000]]
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[[Category: Large Structures]]
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[[Category: Joachimiak, A.]]
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[[Category: Psesm]]
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[[Category: MCSG, Midwest Center for Structural Genomics.]]
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[[Category: Joachimiak, A]]
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[[Category: Moy, S.]]
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[[Category: Structural genomic]]
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[[Category: Mulligan, R.]]
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[[Category: Moy, S]]
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[[Category: Nocek, B.]]
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[[Category: Mulligan, R]]
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[[Category: Nocek, B]]
[[Category: Kdpd]]
[[Category: Kdpd]]
[[Category: Kinase]]
[[Category: Kinase]]
[[Category: Mcsg]]
[[Category: Mcsg]]
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[[Category: Midwest center for structural genomic]]
 
[[Category: Pfam02702]]
[[Category: Pfam02702]]
[[Category: Phosphorylation]]
[[Category: Phosphorylation]]
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[[Category: Protein structure initiative]]
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[[Category: PSI, Protein structure initiative]]
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[[Category: Psi-2]]
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[[Category: Sensor protein]]
[[Category: Sensor protein]]
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[[Category: Structural genomic]]
 
[[Category: Transferase]]
[[Category: Transferase]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 14:30:48 2008''
 

Current revision

Crystal structure of the N-terminal region (19..243) of sensor protein KdpD from Pseudomonas syringae pv. tomato str. DC3000

PDB ID 2r8r

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