This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2rad

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (04:19, 2 July 2021) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2rad.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of the succinoglycan biosynthesis protein. Northeast structural Genomics Consortium target BcR135==
-
The line below this paragraph, containing "STRUCTURE_2rad", creates the "Structure Box" on the page.
+
<StructureSection load='2rad' size='340' side='right'caption='[[2rad]], [[Resolution|resolution]] 2.75&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2rad]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Baccr Baccr]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RAD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RAD FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
-->
+
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2qgm|2qgm]]</div></td></tr>
-
{{STRUCTURE_2rad| PDB=2rad | SCENE= }}
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BC_3120 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=226900 BACCR])</td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rad FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rad OCA], [https://pdbe.org/2rad PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rad RCSB], [https://www.ebi.ac.uk/pdbsum/2rad PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rad ProSAT], [https://www.topsan.org/Proteins/NESGC/2rad TOPSAN]</span></td></tr>
-
'''Crystal structure of the succinoglycan biosynthesis protein. Northeast structural Genomics Consortium target BcR135'''
+
</table>
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
2RAD is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_cereus_atcc_14579 Bacillus cereus atcc 14579]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RAD OCA].
+
<jmolCheckbox>
-
[[Category: Bacillus cereus atcc 14579]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ra/2rad_consurf.spt"</scriptWhenChecked>
-
[[Category: Single protein]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Abashidze, M.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Acton, T B.]]
+
</jmolCheckbox>
-
[[Category: Baran, M C.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rad ConSurf].
-
[[Category: Cunningham, K.]]
+
<div style="clear:both"></div>
-
[[Category: Hunt, J F.]]
+
__TOC__
-
[[Category: Kuzin, A P.]]
+
</StructureSection>
-
[[Category: Liu, J.]]
+
[[Category: Baccr]]
-
[[Category: Mao, L.]]
+
[[Category: Large Structures]]
-
[[Category: Montelione, G T.]]
+
[[Category: Abashidze, M]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Acton, T B]]
-
[[Category: Rost, B.]]
+
[[Category: Baran, M C]]
-
[[Category: Seetharaman, J.]]
+
[[Category: Cunningham, K]]
-
[[Category: Tong, L.]]
+
[[Category: Hunt, J F]]
-
[[Category: Wang, H.]]
+
[[Category: Kuzin, A P]]
-
[[Category: Xiao, R.]]
+
[[Category: Liu, J]]
 +
[[Category: Mao, L]]
 +
[[Category: Montelione, G T]]
 +
[[Category: Structural genomic]]
 +
[[Category: Rost, B]]
 +
[[Category: Seetharaman, J]]
 +
[[Category: Tong, L]]
 +
[[Category: Wang, H]]
 +
[[Category: Xiao, R]]
[[Category: Bcr135]]
[[Category: Bcr135]]
[[Category: Biosynthetic protein]]
[[Category: Biosynthetic protein]]
[[Category: Nesg]]
[[Category: Nesg]]
-
[[Category: Northeast structural genomics consortium]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
[[Category: Succinoglycan biosynthesis protein]]
[[Category: Succinoglycan biosynthesis protein]]
[[Category: Unknown function]]
[[Category: Unknown function]]
-
[[Category: X-ray]]
 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 16:32:09 2008''
 

Current revision

Crystal structure of the succinoglycan biosynthesis protein. Northeast structural Genomics Consortium target BcR135

PDB ID 2rad

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools