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2rbc

From Proteopedia

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[[Image:2rbc.jpg|left|200px]]
 
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{{Structure
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==Crystal structure of a putative ribokinase from Agrobacterium tumefaciens==
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|PDB= 2rbc |SIZE=350|CAPTION= <scene name='initialview01'>2rbc</scene>, resolution 1.900&Aring;
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<StructureSection load='2rbc' size='340' side='right'caption='[[2rbc]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
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<table><tr><td colspan='2'>[[2rbc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrt5 Agrt5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RBC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RBC FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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|GENE= RbsK, AGR_C_4560, Atu2509 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176299 Agrobacterium tumefaciens str. C58])
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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|DOMAIN=
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">RbsK, AGR_C_4560, Atu2509 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176299 AGRT5])</td></tr>
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|RELATEDENTRY=
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rbc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rbc OCA], [https://pdbe.org/2rbc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rbc RCSB], [https://www.ebi.ac.uk/pdbsum/2rbc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rbc ProSAT], [https://www.topsan.org/Proteins/MCSG/2rbc TOPSAN]</span></td></tr>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2rbc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rbc OCA], [http://www.ebi.ac.uk/pdbsum/2rbc PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2rbc RCSB]</span>
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</table>
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}}
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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'''Crystal structure of a putative ribokinase from Agrobacterium tumefaciens'''
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rb/2rbc_consurf.spt"</scriptWhenChecked>
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==About this Structure==
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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2RBC is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens_str._c58 Agrobacterium tumefaciens str. c58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RBC OCA].
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: Agrobacterium tumefaciens str. c58]]
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</jmolCheckbox>
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[[Category: Single protein]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rbc ConSurf].
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[[Category: Cuff, M E.]]
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<div style="clear:both"></div>
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[[Category: Edwards, A M.]]
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__TOC__
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[[Category: Joachimiak, A.]]
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</StructureSection>
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[[Category: MCSG, Midwest Center for Structural Genomics.]]
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[[Category: Agrt5]]
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[[Category: Savchenko, A.]]
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[[Category: Large Structures]]
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[[Category: Xu, X.]]
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[[Category: Cuff, M E]]
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[[Category: Zheng, H.]]
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[[Category: Edwards, A M]]
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[[Category: agrobacterium tumefacien]]
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[[Category: Joachimiak, A]]
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[[Category: atp-binding site]]
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[[Category: Structural genomic]]
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[[Category: mcsg]]
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[[Category: Savchenko, A]]
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[[Category: midwest center for structural genomic]]
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[[Category: Xu, X]]
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[[Category: protein structure initiative]]
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[[Category: Zheng, H]]
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[[Category: psi-2]]
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[[Category: Agrobacterium tumefacien]]
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[[Category: ribokinase family]]
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[[Category: Atp-binding site]]
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[[Category: structural genomic]]
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[[Category: Mcsg]]
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[[Category: sugar kinase]]
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[[Category: PSI, Protein structure initiative]]
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[[Category: transferase]]
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[[Category: Ribokinase family]]
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[[Category: Sugar kinase]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:58:32 2008''
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[[Category: Transferase]]

Current revision

Crystal structure of a putative ribokinase from Agrobacterium tumefaciens

PDB ID 2rbc

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Proteopedia Page Contributors and Editors (what is this?)

OCA

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