This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2rd1

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "2rd1" [edit=sysop:move=sysop])
Current revision (04:21, 2 July 2021) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2rd1.png|left|200px]]
 
-
{{STRUCTURE_2rd1| PDB=2rd1 | SCENE= }}
+
==X-Ray structure of the protein Q7CQI7. Northeast Structural Genomics Consortium target StR87A==
-
 
+
<StructureSection load='2rd1' size='340' side='right'caption='[[2rd1]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-
===X-Ray structure of the protein Q7CQI7. Northeast Structural Genomics Consortium target StR87A===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[2rd1]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Salty Salty]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RD1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RD1 FirstGlance]. <br>
-
 
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
==About this Structure==
+
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2jn0|2jn0]]</div></td></tr>
-
[[2rd1]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium_str._lt2 Salmonella enterica subsp. enterica serovar typhimurium str. lt2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RD1 OCA].
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">STM1585 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=99287 SALTY])</td></tr>
-
[[Category: Salmonella enterica subsp. enterica serovar typhimurium str. lt2]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rd1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rd1 OCA], [https://pdbe.org/2rd1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rd1 RCSB], [https://www.ebi.ac.uk/pdbsum/2rd1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rd1 ProSAT], [https://www.topsan.org/Proteins/NESGC/2rd1 TOPSAN]</span></td></tr>
-
[[Category: Acton, T B.]]
+
</table>
-
[[Category: Baran, M C.]]
+
== Evolutionary Conservation ==
-
[[Category: Fang, Y.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Hunt, J F.]]
+
Check<jmol>
-
[[Category: Kuzin, A P.]]
+
<jmolCheckbox>
-
[[Category: Liu, J.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rd/2rd1_consurf.spt"</scriptWhenChecked>
-
[[Category: Mao, L-C.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Montelione, G T.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
</jmolCheckbox>
-
[[Category: Owens, L.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rd1 ConSurf].
-
[[Category: Rost, B.]]
+
<div style="clear:both"></div>
-
[[Category: Seetharaman, J.]]
+
__TOC__
-
[[Category: Su, M.]]
+
</StructureSection>
-
[[Category: Tong, L.]]
+
[[Category: Large Structures]]
-
[[Category: Vorobiev, S M.]]
+
[[Category: Salty]]
-
[[Category: Wang, D.]]
+
[[Category: Acton, T B]]
-
[[Category: Xiao, R.]]
+
[[Category: Baran, M C]]
 +
[[Category: Fang, Y]]
 +
[[Category: Hunt, J F]]
 +
[[Category: Kuzin, A P]]
 +
[[Category: Liu, J]]
 +
[[Category: Mao, L C]]
 +
[[Category: Montelione, G T]]
 +
[[Category: Structural genomic]]
 +
[[Category: Owens, L]]
 +
[[Category: Rost, B]]
 +
[[Category: Seetharaman, J]]
 +
[[Category: Su, M]]
 +
[[Category: Tong, L]]
 +
[[Category: Vorobiev, S M]]
 +
[[Category: Wang, D]]
 +
[[Category: Xiao, R]]
[[Category: Lipoprotein]]
[[Category: Lipoprotein]]
[[Category: Nesg]]
[[Category: Nesg]]
-
[[Category: Northeast structural genomics consortium]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
[[Category: Q7cqi7]]
[[Category: Q7cqi7]]
[[Category: Str87a]]
[[Category: Str87a]]
-
[[Category: Structural genomic]]
 
[[Category: Unknown function]]
[[Category: Unknown function]]

Current revision

X-Ray structure of the protein Q7CQI7. Northeast Structural Genomics Consortium target StR87A

PDB ID 2rd1

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools