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2rdp

From Proteopedia

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[[Image:2rdp.jpg|left|200px]]
 
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{{Structure
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==The structure of a MarR family protein from Bacillus stearothermophilus==
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|PDB= 2rdp |SIZE=350|CAPTION= <scene name='initialview01'>2rdp</scene>, resolution 2.300&Aring;
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<StructureSection load='2rdp' size='340' side='right'caption='[[2rdp]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>
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<table><tr><td colspan='2'>[[2rdp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_12980 Atcc 12980]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RDP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RDP FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
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|GENE= RBSTP1228 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1422 Geobacillus stearothermophilus])
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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|DOMAIN=
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">RBSTP1228 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1422 ATCC 12980])</td></tr>
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|RELATEDENTRY=
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rdp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rdp OCA], [https://pdbe.org/2rdp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rdp RCSB], [https://www.ebi.ac.uk/pdbsum/2rdp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rdp ProSAT], [https://www.topsan.org/Proteins/MCSG/2rdp TOPSAN]</span></td></tr>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2rdp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rdp OCA], [http://www.ebi.ac.uk/pdbsum/2rdp PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2rdp RCSB]</span>
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</table>
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}}
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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'''The structure of a MarR family protein from Bacillus stearothermophilus'''
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rd/2rdp_consurf.spt"</scriptWhenChecked>
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==About this Structure==
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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2RDP is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RDP OCA].
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: Geobacillus stearothermophilus]]
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</jmolCheckbox>
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[[Category: Protein complex]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rdp ConSurf].
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[[Category: Cuff, M E.]]
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<div style="clear:both"></div>
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[[Category: Dementieva, I.]]
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__TOC__
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[[Category: Duggan, E.]]
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</StructureSection>
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[[Category: Joachimiak, A.]]
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[[Category: Atcc 12980]]
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[[Category: MCSG, Midwest Center for Structural Genomics.]]
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[[Category: Large Structures]]
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[[Category: Moy, S.]]
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[[Category: Cuff, M E]]
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[[Category: marr]]
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[[Category: Dementieva, I]]
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[[Category: mcsg]]
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[[Category: Duggan, E]]
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[[Category: midwest center for structural genomic]]
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[[Category: Joachimiak, A]]
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[[Category: pfam pf01047]]
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[[Category: Structural genomic]]
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[[Category: protein structure initiative]]
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[[Category: Moy, S]]
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[[Category: psi-2]]
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[[Category: Marr]]
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[[Category: structural genomic]]
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[[Category: Mcsg]]
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[[Category: transcriptional regulator]]
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[[Category: Pfam pf01047]]
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[[Category: winged-helix dna binding motif]]
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[[Category: PSI, Protein structure initiative]]
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[[Category: Transcription]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:59:17 2008''
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[[Category: Transcriptional regulator]]
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[[Category: Winged-helix dna binding motif]]

Current revision

The structure of a MarR family protein from Bacillus stearothermophilus

PDB ID 2rdp

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