This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2rfl

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (04:24, 2 July 2021) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2rfl.jpg|left|200px]]
 
-
{{Structure
+
==Crystal structure of the putative phosphohistidine phosphatase SixA from Agrobacterium tumefaciens==
-
|PDB= 2rfl |SIZE=350|CAPTION= <scene name='initialview01'>2rfl</scene>, resolution 2.35&Aring;
+
<StructureSection load='2rfl' size='340' side='right'caption='[[2rfl]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene>
+
<table><tr><td colspan='2'>[[2rfl]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrfc Agrfc]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RFL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RFL FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr>
-
|GENE= AGR_C_2511, Atu1358 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176299 Agrobacterium tumefaciens str. C58])
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG2062 SixA]</span>
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AGR_C_2511, Atu1358 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176299 AGRFC])</td></tr>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2rfl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rfl OCA], [http://www.ebi.ac.uk/pdbsum/2rfl PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2rfl RCSB]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rfl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rfl OCA], [https://pdbe.org/2rfl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rfl RCSB], [https://www.ebi.ac.uk/pdbsum/2rfl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rfl ProSAT], [https://www.topsan.org/Proteins/MCSG/2rfl TOPSAN]</span></td></tr>
-
}}
+
</table>
-
 
+
== Evolutionary Conservation ==
-
'''Crystal structure of the putative phosphohistidine phosphatase SixA from Agrobacterium tumefaciens'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rf/2rfl_consurf.spt"</scriptWhenChecked>
-
2RFL is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens_str._c58 Agrobacterium tumefaciens str. c58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RFL OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Agrobacterium tumefaciens str. c58]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Single protein]]
+
</jmolCheckbox>
-
[[Category: Binkowski, T.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rfl ConSurf].
-
[[Category: Edwards, A M.]]
+
<div style="clear:both"></div>
-
[[Category: Joachimiak, A.]]
+
__TOC__
-
[[Category: Kim, Y.]]
+
</StructureSection>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Category: Agrfc]]
-
[[Category: Savchenko, A.]]
+
[[Category: Large Structures]]
-
[[Category: Xu, X.]]
+
[[Category: Binkowski, T]]
-
[[Category: alpha-beta-alpha sandwich]]
+
[[Category: Edwards, A M]]
-
[[Category: hydrolase]]
+
[[Category: Joachimiak, A]]
-
[[Category: isomerase]]
+
[[Category: Kim, Y]]
-
[[Category: mcsg]]
+
[[Category: Structural genomic]]
-
[[Category: midwest center for structural genomic]]
+
[[Category: Savchenko, A]]
-
[[Category: protein structure initiative]]
+
[[Category: Xu, X]]
-
[[Category: psi-2]]
+
[[Category: Alpha-beta-alpha sandwich]]
-
[[Category: structural genomic]]
+
[[Category: Hydrolase]]
-
 
+
[[Category: Isomerase]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:46:04 2008''
+
[[Category: Mcsg]]
 +
[[Category: PSI, Protein structure initiative]]

Current revision

Crystal structure of the putative phosphohistidine phosphatase SixA from Agrobacterium tumefaciens

PDB ID 2rfl

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools