This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2rin

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (04:26, 2 July 2021) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2rin.png|left|200px]]
 
-
<!--
+
==ABC-transporter choline binding protein in complex with acetylcholine==
-
The line below this paragraph, containing "STRUCTURE_2rin", creates the "Structure Box" on the page.
+
<StructureSection load='2rin' size='340' side='right'caption='[[2rin]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2rin]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhizobium_meliloti Rhizobium meliloti]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RIN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RIN FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACH:ACETYLCHOLINE'>ACH</scene></td></tr>
-
-->
+
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2reg|2reg]], [[2rej|2rej]], [[2rf1|2rf1]]</div></td></tr>
-
{{STRUCTURE_2rin| PDB=2rin | SCENE= }}
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">opuC ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=382 Rhizobium meliloti])</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rin FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rin OCA], [https://pdbe.org/2rin PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rin RCSB], [https://www.ebi.ac.uk/pdbsum/2rin PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rin ProSAT]</span></td></tr>
 +
</table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ri/2rin_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rin ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The ATP-binding cassette transporter ChoVWX is one of several choline import systems operating in Sinorhizobium meliloti. Here fluorescence-based ligand binding assays were used to quantitate substrate binding by the periplasmic ligand-binding protein ChoX. These data confirmed that ChoX recognizes choline and acetylcholine with high and medium affinity, respectively. We also report the crystal structures of ChoX in complex with either choline or acetylcholine. These structural investigations revealed an architecture of the ChoX binding pocket and mode of substrate binding similar to that reported previously for several compatible solute-binding proteins. Additionally the ChoX-acetylcholine complex permitted a detailed structural comparison with the carbamylcholine-binding site of the acetylcholine-binding protein from the mollusc Lymnaea stagnalis. In addition to the two liganded structures of ChoX, we were also able to solve the crystal structure of ChoX in a closed, substrate-free conformation that revealed an architecture of the ligand-binding site that is superimposable to the closed, ligand-bound form of ChoX. This structure is only the second of its kind and raises the important question of how ATP-binding cassette transporters are capable of distinguishing liganded and unliganded-closed states of the binding protein.
-
===ABC-transporter choline binding protein in complex with acetylcholine===
+
Crystal structures of the choline/acetylcholine substrate-binding protein ChoX from Sinorhizobium meliloti in the liganded and unliganded-closed states.,Oswald C, Smits SH, Hoing M, Sohn-Bosser L, Dupont L, Le Rudulier D, Schmitt L, Bremer E J Biol Chem. 2008 Nov 21;283(47):32848-59. Epub 2008 Sep 8. PMID:18779321<ref>PMID:18779321</ref>
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 2rin" style="background-color:#fffaf0;"></div>
-
<!--
+
==See Also==
-
The line below this paragraph, {{ABSTRACT_PUBMED_18779321}}, adds the Publication Abstract to the page
+
*[[ABC transporter 3D structures|ABC transporter 3D structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 18779321 is the PubMed ID number.
+
== References ==
-
-->
+
<references/>
-
{{ABSTRACT_PUBMED_18779321}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
[[Category: Large Structures]]
-
2RIN is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Sinorhizobium_meliloti Sinorhizobium meliloti]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RIN OCA].
+
[[Category: Rhizobium meliloti]]
-
 
+
[[Category: Bremer, E]]
-
==Reference==
+
[[Category: Hoeing, M]]
-
<ref group="xtra">PMID:18779321</ref><references group="xtra"/>
+
[[Category: Oswald, C]]
-
[[Category: Sinorhizobium meliloti]]
+
[[Category: Rudulier, D Le]]
-
[[Category: Bremer, E.]]
+
[[Category: Schmitt, L]]
-
[[Category: Hoeing, M.]]
+
[[Category: Smits, S H.J]]
-
[[Category: Oswald, C.]]
+
[[Category: Sohn-Boeser, L]]
-
[[Category: Rudulier, D Le.]]
+
-
[[Category: Schmitt, L.]]
+
-
[[Category: Smits, S H.J.]]
+
-
[[Category: Sohn-Boeser, L.]]
+
[[Category: Abc-transporter]]
[[Category: Abc-transporter]]
[[Category: Acetylcholine]]
[[Category: Acetylcholine]]
Line 37: Line 49:
[[Category: Protein binding]]
[[Category: Protein binding]]
[[Category: Type ii binding protein]]
[[Category: Type ii binding protein]]
- 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 13:36:32 2009''
 

Current revision

ABC-transporter choline binding protein in complex with acetylcholine

PDB ID 2rin

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools