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2rjb
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="2rjb" size="350" color="white" frame="true" align="right" spinBox="true" caption="2rjb, resolution 2.60Å" /> '''Crystal structure of...) |
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| - | [[Image:2rjb.gif|left|200px]]<br /><applet load="2rjb" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2rjb, resolution 2.60Å" /> | ||
| - | '''Crystal structure of uncharacterized protein YdcJ (SF1787) from Shigella flexneri which includes domain DUF1338. Northeast Structural Genomics Consortium target SfR276'''<br /> | ||
| - | == | + | ==Crystal structure of uncharacterized protein YdcJ (SF1787) from Shigella flexneri which includes domain DUF1338. Northeast Structural Genomics Consortium target SfR276== |
| - | + | <StructureSection load='2rjb' size='340' side='right'caption='[[2rjb]], [[Resolution|resolution]] 2.60Å' scene=''> | |
| - | [[Category: Shigella | + | == Structural highlights == |
| - | [[Category: | + | <table><tr><td colspan='2'>[[2rjb]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/"shigella_paradysenteriae"_weldin_1927 "shigella paradysenteriae" weldin 1927]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RJB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RJB FirstGlance]. <br> |
| - | [[Category: Acton, T | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> |
| - | [[Category: Baran, M | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | [[Category: Chen, Y | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">S1487, SF1787 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=623 "Shigella paradysenteriae" Weldin 1927])</td></tr> |
| - | [[Category: Cunningham, K | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rjb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rjb OCA], [https://pdbe.org/2rjb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rjb RCSB], [https://www.ebi.ac.uk/pdbsum/2rjb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rjb ProSAT], [https://www.topsan.org/Proteins/NESGC/2rjb TOPSAN]</span></td></tr> |
| - | [[Category: Fang, Y | + | </table> |
| - | [[Category: Hunt, J | + | == Evolutionary Conservation == |
| - | [[Category: Liu, J | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [[Category: Ma, L | + | Check<jmol> |
| - | [[Category: Montelione, G | + | <jmolCheckbox> |
| - | [[Category: | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rj/2rjb_consurf.spt"</scriptWhenChecked> |
| - | [[Category: Rost, B | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: Seetharaman, J | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: Tong, L | + | </jmolCheckbox> |
| - | [[Category: Wang, D | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rjb ConSurf]. |
| - | [[Category: Xia, R | + | <div style="clear:both"></div> |
| - | [[Category: | + | __TOC__ |
| - | [[Category: | + | </StructureSection> |
| - | + | [[Category: Shigella paradysenteriae weldin 1927]] | |
| - | + | [[Category: Large Structures]] | |
| - | [[Category: | + | [[Category: Acton, T B]] |
| - | + | [[Category: Baran, M C]] | |
| - | + | [[Category: Chen, Y]] | |
| - | [[Category: | + | [[Category: Cunningham, K]] |
| - | + | [[Category: Fang, Y]] | |
| - | + | [[Category: Hunt, J F]] | |
| + | [[Category: Liu, J]] | ||
| + | [[Category: Ma, L C]] | ||
| + | [[Category: Montelione, G T]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Rost, B]] | ||
| + | [[Category: Seetharaman, J]] | ||
| + | [[Category: Tong, L]] | ||
| + | [[Category: Wang, D]] | ||
| + | [[Category: Xia, R]] | ||
| + | [[Category: Nesg]] | ||
| + | [[Category: PSI, Protein structure initiative]] | ||
| + | [[Category: Uncharacterized protein]] | ||
| + | [[Category: Unknown function]] | ||
Current revision
Crystal structure of uncharacterized protein YdcJ (SF1787) from Shigella flexneri which includes domain DUF1338. Northeast Structural Genomics Consortium target SfR276
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Categories: Shigella paradysenteriae weldin 1927 | Large Structures | Acton, T B | Baran, M C | Chen, Y | Cunningham, K | Fang, Y | Hunt, J F | Liu, J | Ma, L C | Montelione, G T | Structural genomic | Rost, B | Seetharaman, J | Tong, L | Wang, D | Xia, R | Nesg | PSI, Protein structure initiative | Uncharacterized protein | Unknown function
