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2vlb
From Proteopedia
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| - | == | + | |
| - | <StructureSection load='2vlb' size='340' side='right' caption='[[2vlb]], [[Resolution|resolution]] 1.92Å' scene=''> | + | ==Structure of unliganded arylmalonate decarboxylase== |
| + | <StructureSection load='2vlb' size='340' side='right'caption='[[2vlb]], [[Resolution|resolution]] 1.92Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2vlb]] is a 4 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2vlb]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/"alcaligenes_bronchicanis"_(ferry_1911)_haupt_1935 "alcaligenes bronchicanis" (ferry 1911) haupt 1935]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VLB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VLB FirstGlance]. <br> |
| - | </td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>< | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> |
| - | <tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Arylmalonate_decarboxylase Arylmalonate decarboxylase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.76 4.1.1.76] </span></td></tr> |
| - | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vlb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vlb OCA], [https://pdbe.org/2vlb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vlb RCSB], [https://www.ebi.ac.uk/pdbsum/2vlb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vlb ProSAT]</span></td></tr> |
| - | <table> | + | </table> |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vl/2vlb_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vl/2vlb_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vlb ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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Active-site mobility revealed by the crystal structure of arylmalonate decarboxylase from Bordetella bronchiseptica.,Kuettner EB, Keim A, Kircher M, Rosmus S, Strater N J Mol Biol. 2008 Mar 21;377(2):386-94. Epub 2008 Jan 5. PMID:18258259<ref>PMID:18258259</ref> | Active-site mobility revealed by the crystal structure of arylmalonate decarboxylase from Bordetella bronchiseptica.,Kuettner EB, Keim A, Kircher M, Rosmus S, Strater N J Mol Biol. 2008 Mar 21;377(2):386-94. Epub 2008 Jan 5. PMID:18258259<ref>PMID:18258259</ref> | ||
| - | From | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> |
</div> | </div> | ||
| + | <div class="pdbe-citations 2vlb" style="background-color:#fffaf0;"></div> | ||
== References == | == References == | ||
<references/> | <references/> | ||
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</StructureSection> | </StructureSection> | ||
[[Category: Arylmalonate decarboxylase]] | [[Category: Arylmalonate decarboxylase]] | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: Keim, A | + | [[Category: Keim, A]] |
| - | [[Category: Kircher, M | + | [[Category: Kircher, M]] |
| - | [[Category: Kuettner, E B | + | [[Category: Kuettner, E B]] |
| - | [[Category: Rosmus, S | + | [[Category: Rosmus, S]] |
| - | [[Category: Strater, N | + | [[Category: Strater, N]] |
[[Category: Amdase]] | [[Category: Amdase]] | ||
[[Category: Decarboxylase]] | [[Category: Decarboxylase]] | ||
Current revision
Structure of unliganded arylmalonate decarboxylase
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