This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


Ferritin 3D structures

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 6: Line 6:
*Ferritin
*Ferritin
-
**[[6kh0]] – prFR (mutant) + Fe - prawn<br />
+
**[[6lru]], [[6lrv]], [[6lrw]], [[6lrx]], [[6ls2]] – prFR (mutant) - prawn<br />
-
**[[6kh1]], [[6kh3]], [[6kh4]], [[6kh5]] – prFR (mutant) + Fe + Ni<br />
+
**[[6kzy]] – coFR + Cu - cockle<br />
**[[6kzy]] – coFR + Cu - cockle<br />
-
**[[6l55]], [[6l56]], [[6l58]] – coFR + Fe<br />
+
**[[6lpe]] – woFR + Mg - worm<br />
-
**[[6lp5]] – FR + Fe - clam<br />
+
**[[6j4j]], [[6j4m]] – soFR (mutant) – soybean<br />
**[[6j4j]], [[6j4m]] – soFR (mutant) – soybean<br />
**[[3a68]] – soFR from gene SferH4<br />
**[[3a68]] – soFR from gene SferH4<br />
**[[3a9q]] - soFR from gene SferH4 (mutant) <br />
**[[3a9q]] - soFR from gene SferH4 (mutant) <br />
**[[3egm]], [[3bve]], [[3bvf]], [[3bvi]], [[3bvk]], [[3bvl]] – HpFR – ''Heliobacter pylori''<br />
**[[3egm]], [[3bve]], [[3bvf]], [[3bvi]], [[3bvk]], [[3bvl]] – HpFR – ''Heliobacter pylori''<br />
-
**[[5c6f]] – HpFR (mutant) + Fe <br />
+
**[[1z4a]], [[1vlg]] – TmFR – ''Thermotoga maritime''<br />
-
**[[1z4a]], [[1vlg]] – FR – ''Thermotoga maritime''<br />
+
**[[1s3q]], [[1sq3]], [[3kx9]], [[5v5k]] – FR – ''Archaeoglubus fulgidus''<br />
**[[1s3q]], [[1sq3]], [[3kx9]], [[5v5k]] – FR – ''Archaeoglubus fulgidus''<br />
**[[1krq]] – FR – ''Campylobacter jejuni''<br />
**[[1krq]] – FR – ''Campylobacter jejuni''<br />
**[[1eum]] - EcFR – ''Escherichia coli''<br />
**[[1eum]] - EcFR – ''Escherichia coli''<br />
-
**[[4reu]] – EcFR + Fe<br />
 
-
**[[4xgs]] – EcFR (mutant) + Fe2O2<br />
 
-
**[[4ztt]] – EcFR (mutant) + Fe2O + Fe2 + Fe + O2<br />
 
**[[1qgh]] – LiFR - ''Listeria innocua''<br />
**[[1qgh]] – LiFR - ''Listeria innocua''<br />
**[[3qz3]] - VcFR – ''Vibrio cholerae''<br / >
**[[3qz3]] - VcFR – ''Vibrio cholerae''<br / >
**[[3vnx]] – FR – ''Ulva pertusa''<br />
**[[3vnx]] – FR – ''Ulva pertusa''<br />
**[[4ism]], [[4isp]], [[4itt]], [[4itw]], [[4iwj]], [[4iwk]], [[4ixk]], [[3e6r]], [[3e6s]] – PnmFR – ''Pseudo-nitschia multiseries''<br />
**[[4ism]], [[4isp]], [[4itt]], [[4itw]], [[4iwj]], [[4iwk]], [[4ixk]], [[3e6r]], [[3e6s]] – PnmFR – ''Pseudo-nitschia multiseries''<br />
-
**[[4zkh]], [[4zkw]], [[4zkx]], [[4zl5]], [[4zl6]], [[4zlw]], [[4zmc]] – PnmFR (mutant) + Fe<br />
 
**[[1z6o]] – FR – ''Trichoplusia ni''<br />
**[[1z6o]] – FR – ''Trichoplusia ni''<br />
**[[5n5f]] – FR – ''Haliangium ochraceum''<br />
**[[5n5f]] – FR – ''Haliangium ochraceum''<br />
**[[5ouz]], [[5ouw]] – SyFR – ''Synechococcus''<br />
**[[5ouz]], [[5ouw]] – SyFR – ''Synechococcus''<br />
**[[6som]], [[6sop]] – SyFR (mutant) <br />
**[[6som]], [[6sop]] – SyFR (mutant) <br />
 +
**[[6a4u]] – FR (mutant) – ''Marsupenaeus japonicus'' <br />
 +
**[[2jd6]], [[2jd7]] – PfFR - ''Pyrococcus furiosus'' <br />
 +
**[[6lij]] – CgFR + Mg<br />
 +
 +
*Ferritin containing Fe
 +
 +
**[[6kh0]], [[6lbc]], [[6lbd]] – prFR (mutant) + Fe <br />
 +
**[[6kh1]], [[6kh3]], [[6kh4]], [[6kh5]] – prFR (mutant) + Fe + Ni<br />
 +
**[[7cpi]] – prFR + Fe + Zn<br />
 +
**[[7cpc]] – prFR + Fe + Ni<br />
 +
**[[6l55]], [[6l56]], [[6l58]] – coFR + Fe<br />
 +
**[[6lp5]] – FR + Fe - clam<br />
 +
**[[6lpd]] – woFR + Fe <br />
 +
**[[6lk9]] – FR + Fe - salmon<br />
 +
**[[5c6f]] – HpFR (mutant) + Fe <br />
 +
**[[6ls3]] – TmFR + Fe<br />
 +
**[[6ls0]] – TmFR (mutant) + Fe<br />
 +
**[[4reu]] – EcFR + Fe<br />
 +
**[[4xgs]] – EcFR (mutant) + Fe2O2<br />
 +
**[[4ztt]] – EcFR (mutant) + Fe2O + Fe2 + Fe + O2<br />
 +
**[[4zkh]], [[4zkw]], [[4zkx]], [[4zl5]], [[4zl6]], [[4zlw]], [[4zmc]] – PnmFR (mutant) + Fe<br />
**[[6gkc]], [[6gka]] – SyFR + Fe <br />
**[[6gkc]], [[6gka]] – SyFR + Fe <br />
**[[6gkb]], [[6son]], [[6soo]], [[6soq]], [[6sor]] – SyFR (mutant) + Fe <br />
**[[6gkb]], [[6son]], [[6soo]], [[6soq]], [[6sor]] – SyFR (mutant) + Fe <br />
-
**[[6a4u]] – FR (mutant) – ''Marsupenaeus japonicus'' <br />
 
**[[4cmy]] – FR + Fe – ''Chlorobaculum tepidum''<br />
**[[4cmy]] – FR + Fe – ''Chlorobaculum tepidum''<br />
-
**[[2jd6]], [[2jd7]] – PfFR - ''Pyrococcus furiosus'' <br />
+
**[[6sv1]] – FR + Fe – ''Rhodospirillum rubrum''<br />
 +
**[[6ljg]] – CgFR (mutant) + Fe – ''Crassostrea gigas''<br />
 +
**[[7emk]] – FR + Fe – ''Dendrorhynchus sinensis''<br />
*Ferritin light chain (FTL)
*Ferritin light chain (FTL)
-
**[[1fha]], [[5lg8]] - hFTL+ Fe - human<br />
+
**[[1fha]], [[5lg8]], [[6tsa]], [[6ts1]], [[6tsf]], [[6tsj]] - hFTL+ Fe - human<br />
 +
**[[6tr9]], [[6ts0]] - hFTL (mutant) + Fe<br />
**[[3o7s]], [[3u90]], [[6msx]], [[6gxj]] – hoFTL - horse<br />
**[[3o7s]], [[3u90]], [[6msx]], [[6gxj]] – hoFTL - horse<br />
**[[4v1w]], [[6rjh]] – hoFTL – cryo EM<br />
**[[4v1w]], [[6rjh]] – hoFTL – cryo EM<br />
-
**[[3noz]], [[3np0]], [[3np2]], [[3o7r]] – hoFTL (mutant) <br />
+
**[[3noz]], [[3np0]], [[3np2]], [[3o7r]], [[7bom]], [[7bon]] – hoFTL (mutant) <br />
**[[5lg2]] - hoFTL + Fe<br />
**[[5lg2]] - hoFTL + Fe<br />
**[[6fx9]] - hoFTL + Au + Cd<br />
**[[6fx9]] - hoFTL + Au + Cd<br />
 +
**[[7bd7]] - hoFTL + As + Pt + Cd<br />
**[[5czu]] - hoFTL (mutant) + Fe<br />
**[[5czu]] - hoFTL (mutant) + Fe<br />
**[[3rav]], [[3rd0]] – hoFTL + barbiturate
**[[3rav]], [[3rd0]] – hoFTL + barbiturate
-
**[[1lb3]], [[1h96]] – mFTL – mouse<br />
+
**[[1lb3]], [[1h96]], [[6z3d]] – mFTL – mouse<br />
 +
**[[6zh5]], [[6zlq]] - mFTL + Fe – Cryo EM<br />
*Ferritin middle subunit (FTM)
*Ferritin middle subunit (FTM)
Line 62: Line 80:
**[[1bg7]] – bFTM + Ca<br />
**[[1bg7]] – bFTM + Ca<br />
**[[3re7]] – bFTM + Cu<br />
**[[3re7]] – bFTM + Cu<br />
 +
**[[6i36]] – FTM + Fe – ''Lithobates catesbeianus''<br />
*Ferritin heavy subunit (FTH)
*Ferritin heavy subunit (FTH)
Line 67: Line 86:
**[[5gou]], [[5yi5]], [[6j4a]], [[6job]] – hFTH <br />
**[[5gou]], [[5yi5]], [[6j4a]], [[6job]] – hFTH <br />
**[[5xb1]], [[6ipc]], [[5znd]], [[6j7g]], [[6jps]], [[6ke2]], [[6ke4]] – hFTH (mutant)<br />
**[[5xb1]], [[6ipc]], [[5znd]], [[6j7g]], [[6jps]], [[6ke2]], [[6ke4]] – hFTH (mutant)<br />
-
**[[4oyn]], [[4y08]], [[4zjk]], [[5jkk]], [[5jkl]], [[5jkm]], [[6b8g]], [[6b8f]], [[4ykh]], [[6h6u]], [[6m52]], [[6m54]] – hFTH + Fe<br />
+
**[[4oyn]], [[4y08]], [[4zjk]], [[5jkk]], [[5jkl]], [[5jkm]], [[6b8g]], [[6b8f]], [[4ykh]], [[6h6t]], [[6h6u]], [[6m52]], [[6m54]], [[6wyf]], [[6wyg]], [[6wyh]], [[7k26]] – hFTH + Fe<br />
-
**[[6ipp]] – hFTH (mutant) + Fe<br />
+
**[[6ipp]], [[7ck8]] – hFTH (mutant) + Fe<br />
-
**[[6v21]] – mFTH – Cryo EM<br />
+
**[[7jgk]], [[7jgm]], [[7jgo]], [[7jgp]], [[7jgq]] – hFTH + Ni<br />
 +
**[[7jgl]], [[7jgn]] – hFTH + Zn<br />
 +
**[[5gn8]] – hFTH + Ca<br />
 +
**[[7ck9]] – hFTH + Mg<br />
 +
**[[6v21]], [[7kod]] – mFTH – Cryo EM<br />
**[[3wnw]] – mFTH + Fe<br />
**[[3wnw]] – mFTH + Fe<br />
**[[6sht]] – mFTH + Fe – Cryo EM<br />
**[[6sht]] – mFTH + Fe – Cryo EM<br />
Line 116: Line 139:
*apo-ferritin heavy chain (apo-FTH)
*apo-ferritin heavy chain (apo-FTH)
-
**[[6z6u]], [[6z9e]], [[6z9f]] – apo-hFTH – Cryo EM<br />
+
**[[6z6u]], [[6z9e]], [[6z9f]], [[7a6a]], [[7a6b]] – apo-hFTH – Cryo EM<br />
**[[3erz]] – apo-hFTH+Hg<br />
**[[3erz]] – apo-hFTH+Hg<br />
**[[3es3]] - apo-hFTH+Au<br />
**[[3es3]] - apo-hFTH+Au<br />
Line 127: Line 150:
**[[2cn7]], [[2fha]] – apo-hFTH (mutant) + Ca<br />
**[[2cn7]], [[2fha]] – apo-hFTH (mutant) + Ca<br />
**[[2z6m]] – hFTH + Zn<br />
**[[2z6m]] – hFTH + Zn<br />
 +
**[[7k3v]], [[7k3w]] – apo-hFTH + Zn – Cryo EM<br />
**[[2chi]], [[2clu]], [[2cei]], [[2cih]], [[2cn6]], [[2iu2]], [[5cmq]], [[5cmr]], [[2z6m]] – apo-hFTH (mutant) + Zn<br />
**[[2chi]], [[2clu]], [[2cei]], [[2cih]], [[2cn6]], [[2iu2]], [[5cmq]], [[5cmr]], [[2z6m]] – apo-hFTH (mutant) + Zn<br />
**[[5up8]], [[5up9]] – apo-hFTH+ Zn + oxamate derivative<br />
**[[5up8]], [[5up9]] – apo-hFTH+ Zn + oxamate derivative<br />
Line 134: Line 158:
**[[5gu0]], [[5gu1]], [[5gu2]], [[5gu3]], [[2za7]], [[2za8]] - apo-hoFTH (mutant) + Cd<br />
**[[5gu0]], [[5gu1]], [[5gu2]], [[5gu3]], [[2za7]], [[2za8]] - apo-hoFTH (mutant) + Cd<br />
**[[6s61]] - apo-mFTH + Fe + Zn<br />
**[[6s61]] - apo-mFTH + Fe + Zn<br />
 +
**[[7a4m]] - apo-mFTH + Fe + Zn – Cryo EM<br />
**[[5obb]] – mFTL + Tb<br />
**[[5obb]] – mFTL + Tb<br />

Revision as of 07:28, 27 July 2021

3D Structures of Ferritin

Updated on 27-July-2021

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Joel L. Sussman, Jaime Prilusky

Retrieved from "http://52.214.119.220/wiki/index.php/Ferritin_3D_structures"
Personal tools