1l6q

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{{Theoretical_model}}
{{Theoretical_model}}
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{{Seed}}
 
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[[Image:1l6q.png|left|200px]]
 
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==MOUSE MAJOR HISTOCOMPATIBILITY COMPLEX CLASS I PROTEIN H2-KD==
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The line below this paragraph, containing "STRUCTURE_1l6q", creates the "Structure Box" on the page.
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<StructureSection load='1l6q' size='340' side='right'caption='[[1l6q]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1L6Q FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1l6q FirstGlance], [https://www.ebi.ac.uk/pdbsum/1l6q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1l6q ProSAT]</span></td></tr>
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</table>
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{{STRUCTURE_1l6q| PDB=1l6q | SCENE= }}
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The recognition of MHC-peptide complexes by T cells is governed by structural considerations that are determined by the sequences of the individual components and their interaction with each other. We have studied the function of a highly diabetogenic CD8 T cell clone that is specific for insulin B15-23:H-2K(d). We have then related this to modeled MHC-peptide structures. The native peptide binds poorly to H-2K(d), because of the small glycine residue at peptide position p9 that is incapable of productive interactions with the hydrophobic residues of pocket F. In addition, electrostatic repulsions between the peptide glutamate residue at position 7 and 152D of the MHC molecule heavy chain contribute to the poor binding. However, B chain peptide 15-23 bound to K(d) shows excellent T cell stimulation and the induction of CD8 cytotoxic T cells. Peptide substitution has also shown that p6G is likely to be a T cell antigen receptor interaction site. Our studies have shown that the predictions seen in the models correlate closely with the observed effects in functional assays and provide insight into how this peptide, which would not be predicted to stimulate these cells on H-2K(d) binding studies alone, could activate such highly pathogenic T cells.
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===MOUSE MAJOR HISTOCOMPATIBILITY COMPLEX CLASS I PROTEIN H2-KD===
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Analysis of structure and function relationships of an autoantigenic peptide of insulin bound to H-2K(d) that stimulates CD8 T cells in insulin-dependent diabetes mellitus.,Wong FS, Moustakas AK, Wen L, Papadopoulos GK, Janeway CA Jr Proc Natl Acad Sci U S A. 2002 Apr 16;99(8):5551-6. Epub 2002 Apr 9. PMID:11943852<ref>PMID:11943852</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_11943852}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 1l6q" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 11943852 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_11943852}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Theoretical Model]]
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Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L6Q OCA].
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[[Category: Large Structures]]
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==Reference==
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<ref group="xtra">PMID:11943852</ref><references group="xtra"/>
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[[Category: Janeway, C A]]
[[Category: Janeway, C A]]
[[Category: Jr]]
[[Category: Jr]]
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[[Category: Wen, L]]
[[Category: Wen, L]]
[[Category: Wong, F S]]
[[Category: Wong, F S]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 8 07:51:30 2010''
 

Current revision

Theoretical Model: The protein structure described on this page was determined theoretically, and hence should be interpreted with caution.

MOUSE MAJOR HISTOCOMPATIBILITY COMPLEX CLASS I PROTEIN H2-KD

PDB ID 1l6q

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