1s9m

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{{Theoretical_model}}
{{Theoretical_model}}
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{{Seed}}
 
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[[Image:1s9m.png|left|200px]]
 
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==STRUCTURAL MODEL OF THE P170R HUMAN SOX9-DNA COMPLEX==
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The line below this paragraph, containing "STRUCTURE_1s9m", creates the "Structure Box" on the page.
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<StructureSection load='1s9m' size='340' side='right'caption='[[1s9m]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1S9M FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1s9m FirstGlance], [https://www.ebi.ac.uk/pdbsum/1s9m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1s9m ProSAT]</span></td></tr>
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</table>
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{{STRUCTURE_1s9m| PDB=1s9m | SCENE= }}
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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In humans, mutations in SOX9 result in a skeletal malformation syndrome, campomelic dysplasia (CD). The present study investigated two major classes of CD mutations: 1) point mutations in the high mobility group (HMG) domain and 2) truncations and frameshifts that alter the C terminus of the protein. We analyzed the effect of one novel mutation and three other point mutations in the HMG domain of SOX9 on the DNA binding and DNA bending properties of the protein. The F12L mutant HMG domain shows negligible DNA binding, the H65Y mutant shows minimal DNA binding, whereas the A19V mutant shows near wild type DNA binding and bends DNA normally. Interestingly, the P70R mutant has altered DNA binding specificity, but also bends DNA normally. The effects of the point mutations were interpreted using a molecular model of the SOX9 HMG domain. We analyzed the effects upon transcription of mutations resembling the truncation and frameshift mutations in CD patients, and found that progressive deletion of the C terminus causes progressive loss of transactivation. Maximal transactivation by SOX9 requires both the C-terminal domain rich in proline, glutamine, and serine and the adjacent domain composed entirely of proline, glutamine, and alanine. Thus, CD arises by mutations that interfere with DNA binding by SOX9 or truncate the C-terminal transactivation domain and thereby impede the ability of SOX9 to activate target genes during organ development.
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===STRUCTURAL MODEL OF THE P170R HUMAN SOX9-DNA COMPLEX===
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Functional and structural studies of wild type SOX9 and mutations causing campomelic dysplasia.,McDowall S, Argentaro A, Ranganathan S, Weller P, Mertin S, Mansour S, Tolmie J, Harley V J Biol Chem. 1999 Aug 20;274(34):24023-30. PMID:10446171<ref>PMID:10446171</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_10446171}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 1s9m" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 10446171 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_10446171}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Theoretical Model]]
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Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S9M OCA].
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[[Category: Large Structures]]
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==Reference==
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<ref group="xtra">PMID:10446171</ref><references group="xtra"/>
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[[Category: Argentaro, A]]
[[Category: Argentaro, A]]
[[Category: Harley, V]]
[[Category: Harley, V]]
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[[Category: Tolmie, J]]
[[Category: Tolmie, J]]
[[Category: Weller, P]]
[[Category: Weller, P]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 8 08:09:47 2010''
 

Current revision

Theoretical Model: The protein structure described on this page was determined theoretically, and hence should be interpreted with caution.

STRUCTURAL MODEL OF THE P170R HUMAN SOX9-DNA COMPLEX

PDB ID 1s9m

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