This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3gvk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:52, 13 October 2021) (edit) (undo)
 
Line 1: Line 1:
==Crystal structure of endo-neuraminidase NF mutant==
==Crystal structure of endo-neuraminidase NF mutant==
-
<StructureSection load='3gvk' size='340' side='right' caption='[[3gvk]], [[Resolution|resolution]] 1.84&Aring;' scene=''>
+
<StructureSection load='3gvk' size='340' side='right'caption='[[3gvk]], [[Resolution|resolution]] 1.84&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3gvk]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpk1f Bpk1f]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GVK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GVK FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3gvk]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Bpk1f Bpk1f]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GVK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GVK FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SIA:O-SIALIC+ACID'>SIA</scene>, <scene name='pdbligand=SLB:5-N-ACETYL-BETA-D-NEURAMINIC+ACID'>SLB</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3gvj|3gvj]]</td></tr>
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=SIA:O-SIALIC+ACID'>SIA</scene>, <scene name='pdbligand=SLB:5-N-ACETYL-BETA-D-NEURAMINIC+ACID'>SLB</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">sia, 17, 17.0 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=344021 BPK1F])</td></tr>
+
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3gvj|3gvj]]</div></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-alpha-sialidase Endo-alpha-sialidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.129 3.2.1.129] </span></td></tr>
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">sia, 17, 17.0 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=344021 BPK1F])</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gvk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gvk OCA], [http://pdbe.org/3gvk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3gvk RCSB], [http://www.ebi.ac.uk/pdbsum/3gvk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3gvk ProSAT]</span></td></tr>
+
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Endo-alpha-sialidase Endo-alpha-sialidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.129 3.2.1.129] </span></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gvk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gvk OCA], [https://pdbe.org/3gvk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gvk RCSB], [https://www.ebi.ac.uk/pdbsum/3gvk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gvk ProSAT]</span></td></tr>
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
Line 31: Line 32:
==See Also==
==See Also==
-
*[[Neuraminidase|Neuraminidase]]
+
*[[Neuraminidase 3D structures|Neuraminidase 3D structures]]
 +
*[[Tailspike protein|Tailspike protein]]
== References ==
== References ==
<references/>
<references/>
Line 38: Line 40:
[[Category: Bpk1f]]
[[Category: Bpk1f]]
[[Category: Endo-alpha-sialidase]]
[[Category: Endo-alpha-sialidase]]
 +
[[Category: Large Structures]]
[[Category: Dickmanns, A]]
[[Category: Dickmanns, A]]
[[Category: Ficner, R]]
[[Category: Ficner, R]]

Current revision

Crystal structure of endo-neuraminidase NF mutant

PDB ID 3gvk

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3gvk"
Personal tools