This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3ic5
From Proteopedia
(Difference between revisions)
| (3 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{STRUCTURE_3ic5| PDB=3ic5 | SCENE= }} | ||
| - | ===N-terminal domain of putative saccharopine dehydrogenase from Ruegeria pomeroyi.=== | ||
| - | == | + | ==N-terminal domain of putative saccharopine dehydrogenase from Ruegeria pomeroyi.== |
| - | [[3ic5]] is a 2 chain structure with sequence from [ | + | <StructureSection load='3ic5' size='340' side='right'caption='[[3ic5]], [[Resolution|resolution]] 2.08Å' scene=''> |
| - | [[Category: | + | == Structural highlights == |
| - | [[Category: Freeman, L | + | <table><tr><td colspan='2'>[[3ic5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_700808 Atcc 700808]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IC5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IC5 FirstGlance]. <br> |
| - | [[Category: Joachimiak, A | + | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | [[Category: | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SPO0234 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=89184 ATCC 700808])</td></tr> |
| - | [[Category: Osipiuk, J | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ic5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ic5 OCA], [https://pdbe.org/3ic5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ic5 RCSB], [https://www.ebi.ac.uk/pdbsum/3ic5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ic5 ProSAT]</span></td></tr> |
| - | [[Category: Tesar, C | + | </table> |
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ic/3ic5_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ic5 ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Atcc 700808]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Freeman, L]] | ||
| + | [[Category: Joachimiak, A]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Osipiuk, J]] | ||
| + | [[Category: Tesar, C]] | ||
[[Category: Apc63807 2]] | [[Category: Apc63807 2]] | ||
[[Category: Mcsg]] | [[Category: Mcsg]] | ||
| - | [[Category: Midwest center for structural genomic]] | ||
[[Category: N-terminal domain]] | [[Category: N-terminal domain]] | ||
| - | [[Category: Protein structure initiative | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
[[Category: Saccharopine dehydrogenase]] | [[Category: Saccharopine dehydrogenase]] | ||
| - | [[Category: Structural genomic]] | ||
[[Category: Unknown function]] | [[Category: Unknown function]] | ||
Current revision
N-terminal domain of putative saccharopine dehydrogenase from Ruegeria pomeroyi.
| |||||||||||
