This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3icl

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: {{Seed}} 200px <!-- The line below this paragraph, containing "STRUCTURE_3icl", creates the "Structure Box" on the page. You may change the PDB parameter (which se...)
Current revision (12:09, 13 October 2021) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3icl.jpg|left|200px]]
 
-
<!--
+
==X-Ray Structure of Protein (EAL/GGDEF domain protein) from M.capsulatus, Northeast Structural Genomics Consortium Target McR174C==
-
The line below this paragraph, containing "STRUCTURE_3icl", creates the "Structure Box" on the page.
+
<StructureSection load='3icl' size='340' side='right'caption='[[3icl]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3icl]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Acm_1292 Acm 1292]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ICL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ICL FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
-->
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_3icl| PDB=3icl | SCENE= }}
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">MCA0337 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=414 ACM 1292])</td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3icl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3icl OCA], [https://pdbe.org/3icl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3icl RCSB], [https://www.ebi.ac.uk/pdbsum/3icl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3icl ProSAT]</span></td></tr>
-
===X-Ray Structure of Protein (EAL/GGDEF domain protein) from M.capsulatus, Northeast Structural Genomics Consortium Target McR174C===
+
</table>
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
3ICL is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Methylococcus_capsulatus Methylococcus capsulatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ICL OCA].
+
<jmolCheckbox>
-
[[Category: Methylococcus capsulatus]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ic/3icl_consurf.spt"</scriptWhenChecked>
-
[[Category: Acton, T B.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Chen, Y.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Ciccosanti, C.]]
+
</jmolCheckbox>
-
[[Category: Everett, J K.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3icl ConSurf].
-
[[Category: Foote, E L.]]
+
<div style="clear:both"></div>
-
[[Category: Hunt, J F.]]
+
__TOC__
-
[[Category: Kuzin, A.]]
+
</StructureSection>
-
[[Category: Mao, M.]]
+
[[Category: Acm 1292]]
-
[[Category: Montelione, G T.]]
+
[[Category: Large Structures]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Acton, T B]]
-
[[Category: Nair, R.]]
+
[[Category: Chen, Y]]
-
[[Category: Rost, B.]]
+
[[Category: Ciccosanti, C]]
-
[[Category: Seetharaman, J.]]
+
[[Category: Everett, J K]]
-
[[Category: Tong, L.]]
+
[[Category: Foote, E L]]
-
[[Category: Wang, H.]]
+
[[Category: Hunt, J F]]
-
[[Category: Xiao, R.]]
+
[[Category: Kuzin, A]]
 +
[[Category: Mao, M]]
 +
[[Category: Montelione, G T]]
 +
[[Category: Structural genomic]]
 +
[[Category: Nair, R]]
 +
[[Category: Rost, B]]
 +
[[Category: Seetharaman, J]]
 +
[[Category: Tong, L]]
 +
[[Category: Wang, H]]
 +
[[Category: Xiao, R]]
[[Category: Consortium]]
[[Category: Consortium]]
-
[[Category: Crystal structure]]
 
[[Category: Mcr174c]]
[[Category: Mcr174c]]
[[Category: Nesg]]
[[Category: Nesg]]
-
[[Category: Northeast structural genomic]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Northeast structural genomics consortium]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
[[Category: Unknown function]]
[[Category: Unknown function]]
- 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug 5 11:05:49 2009''
 

Current revision

X-Ray Structure of Protein (EAL/GGDEF domain protein) from M.capsulatus, Northeast Structural Genomics Consortium Target McR174C

PDB ID 3icl

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3icl"
Personal tools