This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3kbg
From Proteopedia
(Difference between revisions)
| (8 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{Seed}} | ||
| - | [[Image:3kbg.png|left|200px]] | ||
| - | + | ==Crystal structure of the 30S ribosomal protein S4e from Thermoplasma acidophilum. Northeast Structural Genomics Consortium Target TaR28.== | |
| - | + | <StructureSection load='3kbg' size='340' side='right'caption='[[3kbg]], [[Resolution|resolution]] 1.75Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3kbg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"thermoplasma_acidophila"_(sic)_darland_et_al._1970 "thermoplasma acidophila" (sic) darland et al. 1970]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KBG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KBG FirstGlance]. <br> | |
| - | + | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
| - | --> | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">rps4e, Ta1259 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2303 "Thermoplasma acidophila" (sic) Darland et al. 1970])</td></tr> |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3kbg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kbg OCA], [https://pdbe.org/3kbg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3kbg RCSB], [https://www.ebi.ac.uk/pdbsum/3kbg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3kbg ProSAT]</span></td></tr> | |
| + | </table> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kb/3kbg_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3kbg ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| - | == | + | ==See Also== |
| - | + | *[[Ribosomal protein S4|Ribosomal protein S4]] | |
| - | + | __TOC__ | |
| - | + | </StructureSection> | |
| - | + | [[Category: Large Structures]] | |
| - | [[Category: | + | [[Category: Acton, T B]] |
| - | [[Category: Acton, T B | + | [[Category: Belote, R L]] |
| - | [[Category: Belote, R L | + | [[Category: Ciccosanti, C]] |
| - | [[Category: Ciccosanti, C | + | [[Category: Everett, J K]] |
| - | [[Category: Everett, J K | + | [[Category: Hunt, J F]] |
| - | [[Category: Hunt, J F | + | [[Category: Liu, J]] |
| - | [[Category: Liu, J | + | [[Category: Montelione, G T]] |
| - | [[Category: Montelione, G T | + | [[Category: Structural genomic]] |
| - | [[Category: | + | [[Category: Patel, D]] |
| - | [[Category: Patel, D | + | [[Category: Rost, B]] |
| - | [[Category: Rost, B | + | [[Category: Seetharaman, J]] |
| - | [[Category: Seetharaman, J | + | [[Category: Su, M]] |
| - | [[Category: Su, M | + | [[Category: Tong, L]] |
| - | [[Category: Tong, L | + | [[Category: Vorobiev, S M]] |
| - | [[Category: Vorobiev, S M | + | [[Category: Xiao, R]] |
| - | [[Category: Xiao, R | + | |
[[Category: 30s ribosomal protein s4e]] | [[Category: 30s ribosomal protein s4e]] | ||
[[Category: Nesg]] | [[Category: Nesg]] | ||
| - | [[Category: | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
| - | + | ||
[[Category: Ribonucleoprotein]] | [[Category: Ribonucleoprotein]] | ||
[[Category: Ribosomal protein]] | [[Category: Ribosomal protein]] | ||
| Line 42: | Line 48: | ||
[[Category: Rrna-binding]] | [[Category: Rrna-binding]] | ||
[[Category: Rs4e_theac]] | [[Category: Rs4e_theac]] | ||
| - | [[Category: Structural genomic]] | ||
[[Category: Tar28]] | [[Category: Tar28]] | ||
| - | |||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jan 28 15:05:25 2010'' | ||
Current revision
Crystal structure of the 30S ribosomal protein S4e from Thermoplasma acidophilum. Northeast Structural Genomics Consortium Target TaR28.
| |||||||||||
Categories: Large Structures | Acton, T B | Belote, R L | Ciccosanti, C | Everett, J K | Hunt, J F | Liu, J | Montelione, G T | Structural genomic | Patel, D | Rost, B | Seetharaman, J | Su, M | Tong, L | Vorobiev, S M | Xiao, R | 30s ribosomal protein s4e | Nesg | PSI, Protein structure initiative | Ribonucleoprotein | Ribosomal protein | Rna-binding | Rps4e | Rrna-binding | Rs4e theac | Tar28
