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2k4w
From Proteopedia
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| - | {{Seed}} | ||
| - | [[Image:2k4w.png|left|200px]] | ||
| - | < | + | ==The Solution Structure of the Monomeric Copper, Zinc Superoxide Dismutase from Salmonella enterica== |
| - | + | <StructureSection load='2k4w' size='340' side='right'caption='[[2k4w]], [[NMR_Ensembles_of_Models | 30 NMR models]]' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[2k4w]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_choleraesuis_choleraesuis Salmonella choleraesuis choleraesuis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K4W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2K4W FirstGlance]. <br> | |
| - | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU1:COPPER+(I)+ION'>CU1</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | |
| - | - | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">sodC2 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=119912 Salmonella choleraesuis choleraesuis])</td></tr> |
| - | + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Superoxide_dismutase Superoxide dismutase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.15.1.1 1.15.1.1] </span></td></tr> | |
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2k4w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k4w OCA], [https://pdbe.org/2k4w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2k4w RCSB], [https://www.ebi.ac.uk/pdbsum/2k4w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2k4w ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [[https://www.uniprot.org/uniprot/Q704S6_SALET Q704S6_SALET]] Destroys radicals which are normally produced within the cells and which are toxic to biological systems (By similarity).[RuleBase:RU000393] | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k4/2k4w_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2k4w ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | The structure of the SodCII-encoded monomeric Cu, Zn superoxide dismutase from Salmonella enterica has been solved by NMR spectroscopy. This represents the first solution structure of a natural and fully active monomeric superoxide dismutase in solution, providing information useful for the interpretation of the evolutional development of these enzymes. The protein scaffold consists of the characteristic beta-barrel common to the whole enzyme family. The general shape of the protein is quite similar to that of Escherichia coli Cu, Zn superoxide dismutase, although some differences are observed mainly in the active site. SodCII presents a more rigid conformation with respect to the engineered monomeric mutants of the human Cu, Zn superoxide dismutase, even though significant disorder is still present in the loops shaping the active site. The analysis of both dynamics and hydration properties of the protein in solution highlights the factors required to maintain the fully active and, at the same time, monomeric protein. This study provides novel insights into the functional differences between monomeric and dimeric bacterial Cu, Zn superoxide dismutases, in turn helping to explain the convergent evolution toward a dimeric structure in prokaryotic and eukaryotic enzymes of this class. | ||
| - | + | The Solution Structure of the Monomeric Copper, Zinc Superoxide Dismutase from Salmonella enterica: Structural Insights To Understand the Evolution toward the Dimeric Structure.,Mori M, Jimenez B, Piccioli M, Battistoni A, Sette M Biochemistry. 2008 Nov 12. PMID:19006322<ref>PMID:19006322</ref> | |
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 2k4w" style="background-color:#fffaf0;"></div> | ||
| - | + | ==See Also== | |
| - | + | *[[Superoxide dismutase 3D structures|Superoxide dismutase 3D structures]] | |
| - | + | == References == | |
| - | + | <references/> | |
| - | + | __TOC__ | |
| - | + | </StructureSection> | |
| - | == | + | [[Category: Large Structures]] |
| - | + | [[Category: Salmonella choleraesuis choleraesuis]] | |
| - | + | ||
| - | == | + | |
| - | < | + | |
| - | [[Category: Salmonella | + | |
[[Category: Superoxide dismutase]] | [[Category: Superoxide dismutase]] | ||
| - | [[Category: Battistoni, A | + | [[Category: Battistoni, A]] |
| - | [[Category: Jimenez, B | + | [[Category: Jimenez, B]] |
| - | [[Category: Mori, M | + | [[Category: Mori, M]] |
| - | [[Category: Piccioli, M | + | [[Category: Piccioli, M]] |
| - | [[Category: SPINE, Structural Proteomics in Europe | + | [[Category: SPINE, Structural Proteomics in Europe]] |
| - | [[Category: Sette, M | + | [[Category: Sette, M]] |
[[Category: Bioinorganic chemistry]] | [[Category: Bioinorganic chemistry]] | ||
[[Category: Copper]] | [[Category: Copper]] | ||
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[[Category: Structural genomic]] | [[Category: Structural genomic]] | ||
[[Category: Structural proteomics in europe]] | [[Category: Structural proteomics in europe]] | ||
| - | [[Category: Superoxide dismutase]] | ||
[[Category: Zinc]] | [[Category: Zinc]] | ||
| - | |||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun 2 08:26:05 2010'' | ||
Current revision
The Solution Structure of the Monomeric Copper, Zinc Superoxide Dismutase from Salmonella enterica
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Categories: Large Structures | Salmonella choleraesuis choleraesuis | Superoxide dismutase | Battistoni, A | Jimenez, B | Mori, M | Piccioli, M | SPINE, Structural Proteomics in Europe | Sette, M | Bioinorganic chemistry | Copper | Metal-binding | Metalloenzyme | National project on protein structural and functional analyse | Nppsfa | Oxidoreductase | Solution structure | Spine | Structural genomic | Structural proteomics in europe | Zinc

