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2rdm

From Proteopedia

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[[Image:2rdm.jpg|left|200px]]
 
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{{Structure
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==Crystal structure of response regulator receiver protein from Sinorhizobium medicae WSM419==
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|PDB= 2rdm |SIZE=350|CAPTION= <scene name='initialview01'>2rdm</scene>, resolution 1.76&Aring;
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<StructureSection load='2rdm' size='340' side='right'caption='[[2rdm]], [[Resolution|resolution]] 1.76&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
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<table><tr><td colspan='2'>[[2rdm]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Ensifer_medicae Ensifer medicae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RDM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RDM FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
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|GENE= Smed_4830 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=366394 Sinorhizobium medicae WSM419])
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00156 REC]</span>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Smed_4830 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=366394 Ensifer medicae])</td></tr>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2rdm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rdm OCA], [http://www.ebi.ac.uk/pdbsum/2rdm PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2rdm RCSB]</span>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rdm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rdm OCA], [https://pdbe.org/2rdm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rdm RCSB], [https://www.ebi.ac.uk/pdbsum/2rdm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rdm ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2rdm TOPSAN]</span></td></tr>
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}}
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</table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rd/2rdm_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rdm ConSurf].
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<div style="clear:both"></div>
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'''Crystal structure of response regulator receiver protein from Sinorhizobium medicae WSM419'''
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==See Also==
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*[[Response regulator 3D structure|Response regulator 3D structure]]
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__TOC__
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==About this Structure==
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</StructureSection>
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2RDM is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Sinorhizobium_medicae_wsm419 Sinorhizobium medicae wsm419]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RDM OCA].
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[[Category: Ensifer medicae]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Sinorhizobium medicae wsm419]]
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[[Category: Almo, S C]]
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[[Category: Almo, S C.]]
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[[Category: Burley, S K]]
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[[Category: Burley, S K.]]
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[[Category: Gilmore, M]]
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[[Category: Gilmore, M.]]
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[[Category: Groshong, C]]
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[[Category: Groshong, C.]]
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[[Category: Hu, S]]
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[[Category: Hu, S.]]
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[[Category: Meyer, A J]]
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[[Category: Meyer, A J.]]
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[[Category: Structural genomic]]
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[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
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[[Category: Patskovsky, Y]]
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[[Category: Patskovsky, Y.]]
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[[Category: Rodgers, L]]
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[[Category: Rodgers, L.]]
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[[Category: Sauder, J M]]
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[[Category: Sauder, J M.]]
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[[Category: Toro, R]]
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[[Category: Toro, R.]]
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[[Category: Yan, Q]]
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[[Category: Yan, Q.]]
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[[Category: Zhan, C]]
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[[Category: Zhan, C.]]
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[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
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[[Category: new york structural genomix research consortium]]
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[[Category: PSI, Protein structure initiative]]
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[[Category: nysgxrc]]
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[[Category: Unknown function]]
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[[Category: plasmid]]
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[[Category: protein structure initiative]]
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[[Category: psi-2]]
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[[Category: structural genomic]]
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[[Category: unknown function]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:45:57 2008''
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Current revision

Crystal structure of response regulator receiver protein from Sinorhizobium medicae WSM419

PDB ID 2rdm

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