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3cer

From Proteopedia

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(New page: 200px {{Structure |PDB= 3cer |SIZE=350|CAPTION= <scene name='initialview01'>3cer</scene>, resolution 2.40&Aring; |SITE= <scene name='pdbsite=AC1:So4+Binding+Site+...)
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[[Image:3cer.jpg|left|200px]]
 
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{{Structure
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==Crystal structure of the exopolyphosphatase-like protein Q8G5J2. Northeast Structural Genomics Consortium target BlR13==
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|PDB= 3cer |SIZE=350|CAPTION= <scene name='initialview01'>3cer</scene>, resolution 2.40&Aring;
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<StructureSection load='3cer' size='340' side='right'caption='[[3cer]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
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|SITE= <scene name='pdbsite=AC1:So4+Binding+Site+For+Residue+A+344'>AC1</scene>, <scene name='pdbsite=AC2:So4+Binding+Site+For+Residue+A+345'>AC2</scene>, <scene name='pdbsite=AC3:So4+Binding+Site+For+Residue+B+344'>AC3</scene>, <scene name='pdbsite=AC4:So4+Binding+Site+For+Residue+B+345'>AC4</scene>, <scene name='pdbsite=AC5:So4+Binding+Site+For+Residue+C+344'>AC5</scene>, <scene name='pdbsite=AC6:So4+Binding+Site+For+Residue+C+345'>AC6</scene>, <scene name='pdbsite=AC7:So4+Binding+Site+For+Residue+C+346'>AC7</scene>, <scene name='pdbsite=AC8:So4+Binding+Site+For+Residue+C+347'>AC8</scene>, <scene name='pdbsite=AC9:So4+Binding+Site+For+Residue+A+346'>AC9</scene>, <scene name='pdbsite=BC1:So4+Binding+Site+For+Residue+D+344'>BC1</scene>, <scene name='pdbsite=BC2:So4+Binding+Site+For+Residue+E+344'>BC2</scene>, <scene name='pdbsite=BC3:So4+Binding+Site+For+Residue+E+345'>BC3</scene> and <scene name='pdbsite=BC4:So4+Binding+Site+For+Residue+E+346'>BC4</scene>
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
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<table><tr><td colspan='2'>[[3cer]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Biflo Biflo]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CER OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CER FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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|GENE= BL1019 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=206672 Bifidobacterium longum NCC2705])
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam02541 Ppx-GppA]</span>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BL1019 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=206672 BIFLO])</td></tr>
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|RELATEDENTRY=
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cer FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cer OCA], [https://pdbe.org/3cer PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cer RCSB], [https://www.ebi.ac.uk/pdbsum/3cer PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cer ProSAT], [https://www.topsan.org/Proteins/NESGC/3cer TOPSAN]</span></td></tr>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cer FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cer OCA], [http://www.ebi.ac.uk/pdbsum/3cer PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3cer RCSB]</span>
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</table>
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}}
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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'''Crystal structure of the exopolyphosphatase-like protein Q8G5J2. Northeast Structural Genomics Consortium target BlR13'''
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ce/3cer_consurf.spt"</scriptWhenChecked>
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==About this Structure==
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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3CER is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bifidobacterium_longum_ncc2705 Bifidobacterium longum ncc2705]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CER OCA].
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: Bifidobacterium longum ncc2705]]
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</jmolCheckbox>
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[[Category: Single protein]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cer ConSurf].
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[[Category: Acton, T B.]]
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<div style="clear:both"></div>
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[[Category: Baran, M C.]]
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__TOC__
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[[Category: Chen, Y.]]
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</StructureSection>
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[[Category: Cunningham, K.]]
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[[Category: Biflo]]
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[[Category: Fang, Y.]]
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[[Category: Large Structures]]
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[[Category: Hunt, J F.]]
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[[Category: Acton, T B]]
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[[Category: Kuzin, A P.]]
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[[Category: Baran, M C]]
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[[Category: Liu, J.]]
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[[Category: Chen, Y]]
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[[Category: Ma, L-C.]]
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[[Category: Cunningham, K]]
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[[Category: Montelione, G T.]]
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[[Category: Fang, Y]]
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[[Category: NESG, Northeast Structural Genomics Consortium.]]
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[[Category: Hunt, J F]]
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[[Category: Neely, H.]]
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[[Category: Kuzin, A P]]
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[[Category: Rost, B.]]
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[[Category: Liu, J]]
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[[Category: Seetharaman, J.]]
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[[Category: Ma, L C]]
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[[Category: Shastry, R.]]
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[[Category: Montelione, G T]]
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[[Category: Su, M.]]
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[[Category: Structural genomic]]
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[[Category: Tong, L.]]
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[[Category: Neely, H]]
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[[Category: Xiao, R.]]
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[[Category: Rost, B]]
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[[Category: blr13]]
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[[Category: Seetharaman, J]]
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[[Category: nesg]]
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[[Category: Shastry, R]]
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[[Category: northeast structural genomics consortium]]
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[[Category: Su, M]]
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[[Category: protein structure initiative]]
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[[Category: Tong, L]]
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[[Category: psi-2]]
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[[Category: Xiao, R]]
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[[Category: q8g5j2]]
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[[Category: Blr13]]
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[[Category: structural genomic]]
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[[Category: Nesg]]
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[[Category: structure]]
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[[Category: PSI, Protein structure initiative]]
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[[Category: unknown function]]
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[[Category: Q8g5j2]]
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[[Category: x-ray]]
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[[Category: Unknown function]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 2 12:00:05 2008''
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Current revision

Crystal structure of the exopolyphosphatase-like protein Q8G5J2. Northeast Structural Genomics Consortium target BlR13

PDB ID 3cer

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