This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3djb
From Proteopedia
(Difference between revisions)
| (4 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:3djb.png|left|200px]] | ||
| - | + | ==Crystal structure of a HD-superfamily hydrolase (BT9727_1981) from Bacillus thuringiensis, Northeast Structural Genomics Consortium Target BuR114== | |
| - | + | <StructureSection load='3djb' size='340' side='right'caption='[[3djb]], [[Resolution|resolution]] 2.90Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3djb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bachu Bachu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DJB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DJB FirstGlance]. <br> | |
| - | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | |
| - | == | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | [[3djb]] is a 2 chain structure with sequence from [ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BT9727_1981 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=180856 BACHU])</td></tr> |
| - | [[Category: | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3djb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3djb OCA], [https://pdbe.org/3djb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3djb RCSB], [https://www.ebi.ac.uk/pdbsum/3djb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3djb ProSAT], [https://www.topsan.org/Proteins/NESGC/3djb TOPSAN]</span></td></tr> |
| - | [[Category: Acton, T B | + | </table> |
| - | [[Category: Baran, M C | + | == Evolutionary Conservation == |
| - | [[Category: Cunningham, K | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [[Category: Fang, Y | + | Check<jmol> |
| - | [[Category: Forouhar, F | + | <jmolCheckbox> |
| - | [[Category: Hunt, J F | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dj/3djb_consurf.spt"</scriptWhenChecked> |
| - | [[Category: Janjua, H | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: Liu, J | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: Maglaqui, M | + | </jmolCheckbox> |
| - | [[Category: Montelione, G T | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3djb ConSurf]. |
| - | [[Category: | + | <div style="clear:both"></div> |
| - | [[Category: Owen, L A | + | __TOC__ |
| - | [[Category: Seetharaman, J | + | </StructureSection> |
| - | [[Category: Su, M | + | [[Category: Bachu]] |
| - | [[Category: Tong, L | + | [[Category: Large Structures]] |
| - | [[Category: Vorobiev, S M | + | [[Category: Acton, T B]] |
| - | [[Category: Wang, D | + | [[Category: Baran, M C]] |
| - | [[Category: Xiao, R | + | [[Category: Cunningham, K]] |
| - | [[Category: All alpha-helical protein | + | [[Category: Fang, Y]] |
| + | [[Category: Forouhar, F]] | ||
| + | [[Category: Hunt, J F]] | ||
| + | [[Category: Janjua, H]] | ||
| + | [[Category: Liu, J]] | ||
| + | [[Category: Maglaqui, M]] | ||
| + | [[Category: Montelione, G T]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Owen, L A]] | ||
| + | [[Category: Seetharaman, J]] | ||
| + | [[Category: Su, M]] | ||
| + | [[Category: Tong, L]] | ||
| + | [[Category: Vorobiev, S M]] | ||
| + | [[Category: Wang, D]] | ||
| + | [[Category: Xiao, R]] | ||
| + | [[Category: All alpha-helical protein]] | ||
[[Category: Hydrolase]] | [[Category: Hydrolase]] | ||
[[Category: Nesg]] | [[Category: Nesg]] | ||
| - | [[Category: | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Crystal structure of a HD-superfamily hydrolase (BT9727_1981) from Bacillus thuringiensis, Northeast Structural Genomics Consortium Target BuR114
| |||||||||||
Categories: Bachu | Large Structures | Acton, T B | Baran, M C | Cunningham, K | Fang, Y | Forouhar, F | Hunt, J F | Janjua, H | Liu, J | Maglaqui, M | Montelione, G T | Structural genomic | Owen, L A | Seetharaman, J | Su, M | Tong, L | Vorobiev, S M | Wang, D | Xiao, R | All alpha-helical protein | Hydrolase | Nesg | PSI, Protein structure initiative
