2w84

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{{Seed}}
 
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[[Image:2w84.png|left|200px]]
 
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==Structure of Pex14 in complex with Pex5==
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The line below this paragraph, containing "STRUCTURE_2w84", creates the "Structure Box" on the page.
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<StructureSection load='2w84' size='340' side='right'caption='[[2w84]], [[NMR_Ensembles_of_Models | 10 NMR models]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2w84]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W84 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2W84 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2c0m|2c0m]], [[1fch|1fch]], [[2j9q|2j9q]], [[2c0l|2c0l]], [[2w85|2w85]]</div></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2w84 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2w84 OCA], [https://pdbe.org/2w84 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2w84 RCSB], [https://www.ebi.ac.uk/pdbsum/2w84 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2w84 ProSAT]</span></td></tr>
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{{STRUCTURE_2w84| PDB=2w84 | SCENE= }}
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</table>
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== Disease ==
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[[https://www.uniprot.org/uniprot/PEX5_HUMAN PEX5_HUMAN]] Defects in PEX5 are the cause of peroxisome biogenesis disorder 2A (PBD2A) [MIM:[https://omim.org/entry/214110 214110]]. A fatal peroxisome biogenesis disorder belonging to the Zellweger disease spectrum and characterized clinically by severe neurologic dysfunction with profound psychomotor retardation, severe hypotonia and neonatal seizures, craniofacial abnormalities, liver dysfunction, and biochemically by the absence of peroxisomes. Additional features include cardiovascular and skeletal defects, renal cysts, ocular abnormalities, and hearing impairment. Most severely affected individuals with the classic form of the disease (classic Zellweger syndrome) die within the first year of life.<ref>PMID:7719337</ref> Defects in PEX5 are the cause of peroxisome biogenesis disorder 2B (PBD2B) [MIM:[https://omim.org/entry/202370 202370]]. A peroxisome biogenesis disorder that includes neonatal adrenoleukodystrophy (NALD) and infantile Refsum disease (IRD), two milder manifestations of the Zellweger disease spectrum. The clinical course of patients with the NALD and IRD presentation is variable and may include developmental delay, hypotonia, liver dysfunction, sensorineural hearing loss, retinal dystrophy and vision impairment. Children with the NALD presentation may reach their teens, while patients with the IRD presentation may reach adulthood. The clinical conditions are often slowly progressive in particular with respect to loss of hearing and vision. The biochemical abnormalities include accumulation of phytanic acid, very long chain fatty acids (VLCFA), di- and trihydroxycholestanoic acid and pipecolic acid.
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== Function ==
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[[https://www.uniprot.org/uniprot/PEX5_HUMAN PEX5_HUMAN]] Binds to the C-terminal PTS1-type tripeptide peroxisomal targeting signal (SKL-type) and plays an essential role in peroxisomal protein import.<ref>PMID:7719337</ref> <ref>PMID:7790377</ref> <ref>PMID:7706321</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/w8/2w84_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2w84 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Protein import into peroxisomes depends on a complex and dynamic network of protein-protein interactions. Pex14 is a central component of the peroxisomal import machinery and binds the soluble receptors Pex5 and Pex19, which have important function in the assembly of peroxisome matrix and membrane, respectively. We show that the N-terminal domain of Pex14, Pex14(N), adopts a three-helical fold. Pex5 and Pex19 ligand helices bind competitively to the same surface in Pex14(N) albeit with opposite directionality. The molecular recognition involves conserved aromatic side chains in the Pex5 WxxxF/Y motif and a newly identified F/YFxxxF sequence in Pex19. The Pex14-Pex5 complex structure reveals molecular details for a critical interaction in docking Pex5 to the peroxisomal membrane. We show that mutations of Pex14 residues located in the Pex5/Pex19 binding region disrupt Pex5 and/or Pex19 binding in vitro. The corresponding full-length Pex14 variants are impaired in peroxisomal membrane localisation in vivo, showing that the molecular interactions mediated by the N-terminal domain modulate peroxisomal targeting of Pex14.
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===STRUCTURE OF PEX14 IN COMPEX WITH PEX5===
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Structural basis for competitive interactions of Pex14 with the import receptors Pex5 and Pex19.,Neufeld C, Filipp FV, Simon B, Neuhaus A, Schuller N, David C, Kooshapur H, Madl T, Erdmann R, Schliebs W, Wilmanns M, Sattler M EMBO J. 2009 Mar 18;28(6):745-54. Epub 2009 Feb 5. PMID:19197237<ref>PMID:19197237</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_19197237}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 2w84" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 19197237 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_19197237}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Human]]
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2W84 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W84 OCA].
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[[Category: Large Structures]]
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[[Category: David, C]]
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==Reference==
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[[Category: Erdmann, R]]
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<ref group="xtra">PMID:19197237</ref><references group="xtra"/>
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[[Category: Filipp, F V]]
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[[Category: Homo sapiens]]
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[[Category: Kooshapur, H]]
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[[Category: David, C.]]
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[[Category: Madl, T]]
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[[Category: Erdmann, R.]]
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[[Category: Neufeld, C]]
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[[Category: Filipp, F V.]]
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[[Category: Neuhaus, A]]
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[[Category: Kooshapur, H.]]
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[[Category: Sattler, M]]
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[[Category: Madl, T.]]
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[[Category: Schliebs, W]]
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[[Category: Neufeld, C.]]
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[[Category: Schueller, N]]
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[[Category: Neuhaus, A.]]
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[[Category: Simon, B]]
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[[Category: Sattler, M.]]
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[[Category: Wilmanns, M]]
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[[Category: Schliebs, W.]]
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[[Category: Schueller, N.]]
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[[Category: Simon, B.]]
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[[Category: Wilmanns, M.]]
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[[Category: Alternative splicing]]
[[Category: Alternative splicing]]
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[[Category: Cytoplasm]]
 
[[Category: Disease mutation]]
[[Category: Disease mutation]]
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[[Category: Membrane]]
 
[[Category: Peroxisome]]
[[Category: Peroxisome]]
[[Category: Peroxisome biogenesis disorder]]
[[Category: Peroxisome biogenesis disorder]]
[[Category: Peroxisome import]]
[[Category: Peroxisome import]]
[[Category: Peroxisome targeting signal]]
[[Category: Peroxisome targeting signal]]
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[[Category: Pex14]]
 
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[[Category: Pex5]]
 
[[Category: Phosphoprotein]]
[[Category: Phosphoprotein]]
[[Category: Polymorphism]]
[[Category: Polymorphism]]
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[[Category: Tpr repeat]]
[[Category: Tpr repeat]]
[[Category: Translocation]]
[[Category: Translocation]]
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[[Category: Transport]]
 
[[Category: Zellweger syndrome]]
[[Category: Zellweger syndrome]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 22 10:50:09 2009''
 

Current revision

Structure of Pex14 in complex with Pex5

PDB ID 2w84

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