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2z7e

From Proteopedia

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[[Image:2z7e.png|left|200px]]
 
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{{STRUCTURE_2z7e| PDB=2z7e | SCENE= }}
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==Crystal structure of Aquifex aeolicus IscU with bound [2Fe-2S] cluster==
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<StructureSection load='2z7e' size='340' side='right'caption='[[2z7e]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2z7e]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/"aquifex_aeolicus"_huber_and_stetter_2001 "aquifex aeolicus" huber and stetter 2001]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z7E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Z7E FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AQ_896 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=63363 "Aquifex aeolicus" Huber and Stetter 2001])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2z7e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z7e OCA], [https://pdbe.org/2z7e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2z7e RCSB], [https://www.ebi.ac.uk/pdbsum/2z7e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2z7e ProSAT]</span></td></tr>
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</table>
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== Function ==
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[[https://www.uniprot.org/uniprot/NIFU_AQUAE NIFU_AQUAE]] May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential).
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/z7/2z7e_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2z7e ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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IscU is a key component of the ISC machinery and is involved in the biogenesis of iron-sulfur (Fe-S) proteins. IscU serves as a scaffold for assembly of a nascent Fe-S cluster prior to its delivery to an apo protein. Here, we report the first crystal structure of IscU with a bound [2Fe-2S] cluster from the hyperthermophilic bacterium Aquifex aeolicus, determined at a resolution of 2.3 A, using multiwavelength anomalous diffraction of the cluster. The holo IscU formed a novel asymmetric trimer that harbored only one [2Fe-2S] cluster. One iron atom of the cluster was coordinated by the S(gamma) atom of Cys36 and the N(epsilon) atom of His106, and the other was coordinated by the S(gamma) atoms of Cys63 and Cys107 on the surface of just one of the protomers. However, the cluster was buried inside the trimer between the neighboring protomers. The three protomers were conformationally distinct from one another and associated around a noncrystallographic pseudo-3-fold axis. The three flexible loop regions carrying the ligand-binding residues (Cys36, Cys63, His106 and Cys107) and the N-terminal alpha1 helices were positioned at the interfaces and underwent substantial conformational rearrangement, which stabilized the association of the asymmetric trimer. This unique trimeric A. aeolicus holo-IscU architecture was clearly distinct from other known monomeric apo-IscU/SufU structures, indicating that asymmetric trimer organization, as well as its association/dissociation, would be involved in the scaffolding function of IscU.
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===Crystal structure of Aquifex aeolicus IscU with bound [2Fe-2S] cluster===
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The asymmetric trimeric architecture of [2Fe-2S] IscU: implications for its scaffolding during iron-sulfur cluster biosynthesis.,Shimomura Y, Wada K, Fukuyama K, Takahashi Y J Mol Biol. 2008 Oct 31;383(1):133-43. Epub 2008 Aug 13. PMID:18723024<ref>PMID:18723024</ref>
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{{ABSTRACT_PUBMED_18723024}}
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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==About this Structure==
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<div class="pdbe-citations 2z7e" style="background-color:#fffaf0;"></div>
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[[2z7e]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z7E OCA].
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== References ==
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<references/>
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==Reference==
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__TOC__
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<ref group="xtra">PMID:018723024</ref><references group="xtra"/>
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</StructureSection>
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[[Category: Aquifex aeolicus]]
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[[Category: Aquifex aeolicus huber and stetter 2001]]
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[[Category: Fukuyama, K.]]
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[[Category: Large Structures]]
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[[Category: Shimomura, Y.]]
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[[Category: Fukuyama, K]]
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[[Category: Takahashi, Y.]]
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[[Category: Shimomura, Y]]
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[[Category: Wada, K.]]
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[[Category: Takahashi, Y]]
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[[Category: Wada, K]]
[[Category: Asymmetric trimer]]
[[Category: Asymmetric trimer]]
[[Category: Biosynthesis]]
[[Category: Biosynthesis]]

Current revision

Crystal structure of Aquifex aeolicus IscU with bound [2Fe-2S] cluster

PDB ID 2z7e

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