This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2dtc

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:36, 8 December 2021) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2dtc.png|left|200px]]
 
-
<!--
+
==Crystal structure of MS0666==
-
The line below this paragraph, containing "STRUCTURE_2dtc", creates the "Structure Box" on the page.
+
<StructureSection load='2dtc' size='340' side='right'caption='[[2dtc]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2dtc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DTC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DTC FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dtc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dtc OCA], [https://pdbe.org/2dtc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dtc RCSB], [https://www.ebi.ac.uk/pdbsum/2dtc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dtc ProSAT], [https://www.topsan.org/Proteins/RSGI/2dtc TOPSAN]</span></td></tr>
-
{{STRUCTURE_2dtc| PDB=2dtc | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===Crystal structure of MS0666===
+
[[https://www.uniprot.org/uniprot/RGPS1_MOUSE RGPS1_MOUSE]] Guanine nucleotide exchange factor for the small GTPase RALA. May be involved in cytoskeleton organization.
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
2DTC is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DTC OCA].
+
<jmolCheckbox>
-
[[Category: Mus musculus]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dt/2dtc_consurf.spt"</scriptWhenChecked>
-
[[Category: Kishishita, S.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Murayama, K.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
</jmolCheckbox>
-
[[Category: Shirouzu, M.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dtc ConSurf].
-
[[Category: Terada, T.]]
+
<div style="clear:both"></div>
-
[[Category: Wang, H.]]
+
__TOC__
-
[[Category: Yokoyama, S.]]
+
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Lk3 transgenic mice]]
 +
[[Category: Kishishita, S]]
 +
[[Category: Murayama, K]]
 +
[[Category: Structural genomic]]
 +
[[Category: Shirouzu, M]]
 +
[[Category: Terada, T]]
 +
[[Category: Wang, H]]
 +
[[Category: Yokoyama, S]]
[[Category: National project on protein structural and functional analyse]]
[[Category: National project on protein structural and functional analyse]]
[[Category: Nppsfa]]
[[Category: Nppsfa]]
[[Category: Ph domain]]
[[Category: Ph domain]]
[[Category: Protein binding]]
[[Category: Protein binding]]
-
[[Category: Riken structural genomics/proteomics initiative]]
 
[[Category: Rsgi]]
[[Category: Rsgi]]
-
[[Category: Structural genomic]]
 
- 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 18:52:02 2008''
 

Current revision

Crystal structure of MS0666

PDB ID 2dtc

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools