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2z1m
From Proteopedia
(Difference between revisions)
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==Crystal Structure of GDP-D-Mannose Dehydratase from Aquifex aeolicus VF5== | ==Crystal Structure of GDP-D-Mannose Dehydratase from Aquifex aeolicus VF5== | ||
| - | <StructureSection load='2z1m' size='340' side='right' caption='[[2z1m]], [[Resolution|resolution]] 2.00Å' scene=''> | + | <StructureSection load='2z1m' size='340' side='right'caption='[[2z1m]], [[Resolution|resolution]] 2.00Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2z1m]] is a 4 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2z1m]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquae Aquae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z1M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Z1M FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">rfbD ([ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">rfbD ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224324 AQUAE])</td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/GDP-mannose_4,6-dehydratase GDP-mannose 4,6-dehydratase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.47 4.2.1.47] </span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2z1m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z1m OCA], [https://pdbe.org/2z1m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2z1m RCSB], [https://www.ebi.ac.uk/pdbsum/2z1m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2z1m ProSAT], [https://www.topsan.org/Proteins/RSGI/2z1m TOPSAN]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
| - | [[ | + | [[https://www.uniprot.org/uniprot/O67175_AQUAE O67175_AQUAE]] Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6-deoxy-D-mannose (By similarity).[HAMAP-Rule:MF_00955] |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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[[Category: Aquae]] | [[Category: Aquae]] | ||
[[Category: GDP-mannose 4,6-dehydratase]] | [[Category: GDP-mannose 4,6-dehydratase]] | ||
| + | [[Category: Large Structures]] | ||
[[Category: Kuramitsu, S]] | [[Category: Kuramitsu, S]] | ||
[[Category: Niwa, H]] | [[Category: Niwa, H]] | ||
Revision as of 10:43, 8 December 2021
Crystal Structure of GDP-D-Mannose Dehydratase from Aquifex aeolicus VF5
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