This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2edj
From Proteopedia
(Difference between revisions)
| (14 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2edj.jpg|left|200px]]<br /><applet load="2edj" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2edj" /> | ||
| - | '''Solution structure of the fifth ig-like domain from human Roundabout homolog 2'''<br /> | ||
| - | == | + | ==Solution structure of the fifth ig-like domain from human Roundabout homolog 2== |
| - | + | <StructureSection load='2edj' size='340' side='right'caption='[[2edj]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> | |
| - | + | == Structural highlights == | |
| - | == | + | <table><tr><td colspan='2'>[[2edj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EDJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2EDJ FirstGlance]. <br> |
| - | + | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2edj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2edj OCA], [https://pdbe.org/2edj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2edj RCSB], [https://www.ebi.ac.uk/pdbsum/2edj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2edj ProSAT], [https://www.topsan.org/Proteins/RSGI/2edj TOPSAN]</span></td></tr> | |
| - | [[Category: | + | </table> |
| - | [[Category: | + | == Disease == |
| - | [[Category: Hayashi, F | + | [[https://www.uniprot.org/uniprot/ROBO2_HUMAN ROBO2_HUMAN]] Defects in ROBO2 are the cause of vesicoureteral reflux type 2 (VUR2) [MIM:[https://omim.org/entry/610878 610878]]. VUR is a complex, genetically heterogeneous developmental disorder characterized by the retrograde flow of urine from the bladder into the ureter and is associated with reflux nephropathy, the cause of 15% of end-stage renal disease in children and young adults.<ref>PMID:17357069</ref> Note=A chromosomal aberration involving ROBO2 is a cause of multiple congenital abnormalities, including severe bilateral VUR with ureterovesical junction defects. Translocation t(Y;3)(p11;p12) with PCDH11Y. This translocation disrupts ROBO2 and produces dominant-negative ROBO2 proteins that abrogate SLIT-ROBO signaling in vitro. |
| - | [[Category: Izumi, K | + | == Function == |
| - | [[Category: Kurosaki, C | + | [[https://www.uniprot.org/uniprot/ROBO2_HUMAN ROBO2_HUMAN]] Receptor for SLIT2, and probably SLIT1, which are thought to act as molecular guidance cue in cellular migration, including axonal navigation at the ventral midline of the neural tube and projection of axons to different regions during neuronal development. |
| - | [[Category: | + | == Evolutionary Conservation == |
| - | [[Category: Yokoyama, S | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [[Category: Yoshida, M | + | Check<jmol> |
| - | [[Category: | + | <jmolCheckbox> |
| - | [[Category: | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ed/2edj_consurf.spt"</scriptWhenChecked> |
| - | [[Category: | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: | + | </jmolCheckbox> |
| - | [[Category: | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2edj ConSurf]. |
| - | + | <div style="clear:both"></div> | |
| - | + | == References == | |
| - | + | <references/> | |
| - | + | __TOC__ | |
| + | </StructureSection> | ||
| + | [[Category: Human]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Hayashi, F]] | ||
| + | [[Category: Izumi, K]] | ||
| + | [[Category: Kurosaki, C]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Yokoyama, S]] | ||
| + | [[Category: Yoshida, M]] | ||
| + | [[Category: Beta sandwich]] | ||
| + | [[Category: Cell adhesion]] | ||
| + | [[Category: Kiaa1568 protein]] | ||
| + | [[Category: National project on protein structural and functional analyse]] | ||
| + | [[Category: Nppsfa]] | ||
| + | [[Category: Rsgi]] | ||
Current revision
Solution structure of the fifth ig-like domain from human Roundabout homolog 2
| |||||||||||
