This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2g3j
From Proteopedia
(Difference between revisions)
| (13 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2g3j.gif|left|200px]]<br /><applet load="2g3j" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2g3j, resolution 2.700Å" /> | ||
| - | '''Structure of S.olivaceoviridis xylanase Q88A/R275A mutant'''<br /> | ||
| - | == | + | ==Structure of S.olivaceoviridis xylanase Q88A/R275A mutant== |
| - | + | <StructureSection load='2g3j' size='340' side='right'caption='[[2g3j]], [[Resolution|resolution]] 2.70Å' scene=''> | |
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[2g3j]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"actinomyces_olivaceoviridis"_preobrazhenskaya_and_ryabova_in_gauze_et_al._1957 "actinomyces olivaceoviridis" preobrazhenskaya and ryabova in gauze et al. 1957]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G3J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2G3J FirstGlance]. <br> | ||
| + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=XYS:XYLOPYRANOSE'>XYS</scene></td></tr> | ||
| + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2g3i|2g3i]]</div></td></tr> | ||
| + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2g3j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g3j OCA], [https://pdbe.org/2g3j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2g3j RCSB], [https://www.ebi.ac.uk/pdbsum/2g3j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2g3j ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/g3/2g3j_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2g3j ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Actinomyces olivaceoviridis preobrazhenskaya and ryabova in gauze et al. 1957]] | ||
[[Category: Endo-1,4-beta-xylanase]] | [[Category: Endo-1,4-beta-xylanase]] | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | + | [[Category: Diertavitian, S]] | |
| - | [[Category: Diertavitian, S | + | [[Category: Fujimoto, Z]] |
| - | [[Category: Fujimoto, Z | + | [[Category: Johansson, E]] |
| - | [[Category: Johansson, E | + | [[Category: Kaneko, S]] |
| - | [[Category: Kaneko, S | + | [[Category: Kuno, A]] |
| - | [[Category: Kuno, A | + | [[Category: Leggio, L Lo]] |
| - | [[Category: Leggio, L Lo | + | [[Category: Glycoside hydrolase]] |
| - | [[Category: | + | [[Category: Hydrolase]] |
| - | [[Category: | + | |
| - | + | ||
| - | + | ||
Current revision
Structure of S.olivaceoviridis xylanase Q88A/R275A mutant
| |||||||||||
