This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2g3j

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:39, 29 December 2021) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2g3j.gif|left|200px]]
 
-
{{Structure
+
==Structure of S.olivaceoviridis xylanase Q88A/R275A mutant==
-
|PDB= 2g3j |SIZE=350|CAPTION= <scene name='initialview01'>2g3j</scene>, resolution 2.700&Aring;
+
<StructureSection load='2g3j' size='340' side='right'caption='[[2g3j]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=XYS:XYLOPYRANOSE'>XYS</scene>
+
<table><tr><td colspan='2'>[[2g3j]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"actinomyces_olivaceoviridis"_preobrazhenskaya_and_ryabova_in_gauze_et_al._1957 "actinomyces olivaceoviridis" preobrazhenskaya and ryabova in gauze et al. 1957]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G3J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2G3J FirstGlance]. <br>
-
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=XYS:XYLOPYRANOSE'>XYS</scene></td></tr>
-
|GENE=
+
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2g3i|2g3i]]</div></td></tr>
-
|DOMAIN=
+
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>
-
|RELATEDENTRY=[[2g3i|2G3I]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2g3j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g3j OCA], [https://pdbe.org/2g3j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2g3j RCSB], [https://www.ebi.ac.uk/pdbsum/2g3j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2g3j ProSAT]</span></td></tr>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2g3j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g3j OCA], [http://www.ebi.ac.uk/pdbsum/2g3j PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2g3j RCSB]</span>
+
</table>
-
}}
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
'''Structure of S.olivaceoviridis xylanase Q88A/R275A mutant'''
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/g3/2g3j_consurf.spt"</scriptWhenChecked>
-
==About this Structure==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
2G3J is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Streptomyces_olivaceoviridis Streptomyces olivaceoviridis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G3J OCA].
+
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2g3j ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Actinomyces olivaceoviridis preobrazhenskaya and ryabova in gauze et al. 1957]]
[[Category: Endo-1,4-beta-xylanase]]
[[Category: Endo-1,4-beta-xylanase]]
-
[[Category: Protein complex]]
+
[[Category: Large Structures]]
-
[[Category: Streptomyces olivaceoviridis]]
+
[[Category: Diertavitian, S]]
-
[[Category: Diertavitian, S.]]
+
[[Category: Fujimoto, Z]]
-
[[Category: Fujimoto, Z.]]
+
[[Category: Johansson, E]]
-
[[Category: Johansson, E.]]
+
[[Category: Kaneko, S]]
-
[[Category: Kaneko, S.]]
+
[[Category: Kuno, A]]
-
[[Category: Kuno, A.]]
+
[[Category: Leggio, L Lo]]
-
[[Category: Leggio, L Lo.]]
+
[[Category: Glycoside hydrolase]]
-
[[Category: glycoside hydrolase]]
+
[[Category: Hydrolase]]
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 03:11:17 2008''
+

Current revision

Structure of S.olivaceoviridis xylanase Q88A/R275A mutant

PDB ID 2g3j

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2g3j"
Personal tools