This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2g9d

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:42, 29 December 2021) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2g9d.gif|left|200px]]
 
-
{{Structure
+
==Crystal Structure of Succinylglutamate desuccinylase from Vibrio cholerae, Northeast Structural Genomics Target VcR20==
-
|PDB= 2g9d |SIZE=350|CAPTION= <scene name='initialview01'>2g9d</scene>, resolution 3.00&Aring;
+
<StructureSection load='2g9d' size='340' side='right'caption='[[2g9d]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
+
<table><tr><td colspan='2'>[[2g9d]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibco Vibco]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G9D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2G9D FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|GENE=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2g9d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g9d OCA], [https://pdbe.org/2g9d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2g9d RCSB], [https://www.ebi.ac.uk/pdbsum/2g9d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2g9d ProSAT], [https://www.topsan.org/Proteins/NESGC/2g9d TOPSAN]</span></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG2988 COG2988]</span>
+
</table>
-
|RELATEDENTRY=
+
== Function ==
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2g9d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g9d OCA], [http://www.ebi.ac.uk/pdbsum/2g9d PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2g9d RCSB]</span>
+
[[https://www.uniprot.org/uniprot/ASTE_VIBCH ASTE_VIBCH]] Transforms N(2)-succinylglutamate into succinate and glutamate (By similarity).
-
}}
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
'''Crystal Structure of Succinylglutamate desuccinylase from Vibrio cholerae, Northeast Structural Genomics Target VcR20'''
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/g9/2g9d_consurf.spt"</scriptWhenChecked>
-
==About this Structure==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
2G9D is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_cholerae Vibrio cholerae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G9D OCA].
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Single protein]]
+
</jmolCheckbox>
-
[[Category: Vibrio cholerae]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2g9d ConSurf].
-
[[Category: Acton, T B.]]
+
<div style="clear:both"></div>
-
[[Category: Conover, K.]]
+
__TOC__
-
[[Category: Forouhar, F.]]
+
</StructureSection>
-
[[Category: Hunt, J F.]]
+
[[Category: Large Structures]]
-
[[Category: Jayaraman, S.]]
+
[[Category: Vibco]]
-
[[Category: Montelione, G T.]]
+
[[Category: Acton, T B]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Conover, K]]
-
[[Category: Rong, X.]]
+
[[Category: Forouhar, F]]
-
[[Category: Tong, L.]]
+
[[Category: Hunt, J F]]
-
[[Category: Zhou, W.]]
+
[[Category: Jayaraman, S]]
-
[[Category: alpha-beta protein]]
+
[[Category: Montelione, G T]]
-
[[Category: nesg]]
+
[[Category: Structural genomic]]
-
[[Category: northeast structural genomics consortium]]
+
[[Category: Rong, X]]
-
[[Category: protein structure initiative]]
+
[[Category: Tong, L]]
-
[[Category: psi]]
+
[[Category: Zhou, W]]
-
[[Category: structural genomic]]
+
[[Category: Alpha-beta protein]]
-
 
+
[[Category: Hydrolase]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 03:13:36 2008''
+
[[Category: Nesg]]
 +
[[Category: PSI, Protein structure initiative]]

Current revision

Crystal Structure of Succinylglutamate desuccinylase from Vibrio cholerae, Northeast Structural Genomics Target VcR20

PDB ID 2g9d

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools