This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2gnp

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "2gnp" [edit=sysop:move=sysop])
Current revision (14:46, 29 December 2021) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2gnp.png|left|200px]]
 
-
{{STRUCTURE_2gnp| PDB=2gnp | SCENE= }}
+
==Structural Genomics, the crystal structure of a transcriptional regulator from Streptococcus pneumoniae TIGR4==
-
 
+
<StructureSection load='2gnp' size='340' side='right'caption='[[2gnp]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
-
===Structural Genomics, the crystal structure of a transcriptional regulator from Streptococcus pneumoniae TIGR4===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[2gnp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Strpn Strpn]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GNP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GNP FirstGlance]. <br>
-
 
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
-
==About this Structure==
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[2gnp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GNP OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gnp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gnp OCA], [https://pdbe.org/2gnp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gnp RCSB], [https://www.ebi.ac.uk/pdbsum/2gnp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gnp ProSAT], [https://www.topsan.org/Proteins/MCSG/2gnp TOPSAN]</span></td></tr>
-
[[Category: Streptococcus pneumoniae]]
+
</table>
-
[[Category: Clancy, S.]]
+
== Evolutionary Conservation ==
-
[[Category: Duggan, E.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Joachimiak, A.]]
+
Check<jmol>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
<jmolCheckbox>
-
[[Category: Tan, K.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gn/2gnp_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gnp ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Strpn]]
 +
[[Category: Clancy, S]]
 +
[[Category: Duggan, E]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Structural genomic]]
 +
[[Category: Tan, K]]
[[Category: Apc84799]]
[[Category: Apc84799]]
[[Category: Mcsg]]
[[Category: Mcsg]]
-
[[Category: Midwest center for structural genomic]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi]]
+
[[Category: Streptococcus pneumoniae tigr4]]
[[Category: Streptococcus pneumoniae tigr4]]
-
[[Category: Structural genomic]]
 
[[Category: Unknown function]]
[[Category: Unknown function]]

Current revision

Structural Genomics, the crystal structure of a transcriptional regulator from Streptococcus pneumoniae TIGR4

PDB ID 2gnp

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools