This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2gnp

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:46, 29 December 2021) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2gnp.gif|left|200px]]
 
-
<!--
+
==Structural Genomics, the crystal structure of a transcriptional regulator from Streptococcus pneumoniae TIGR4==
-
The line below this paragraph, containing "STRUCTURE_2gnp", creates the "Structure Box" on the page.
+
<StructureSection load='2gnp' size='340' side='right'caption='[[2gnp]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2gnp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Strpn Strpn]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GNP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GNP FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
-
-->
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_2gnp| PDB=2gnp | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gnp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gnp OCA], [https://pdbe.org/2gnp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gnp RCSB], [https://www.ebi.ac.uk/pdbsum/2gnp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gnp ProSAT], [https://www.topsan.org/Proteins/MCSG/2gnp TOPSAN]</span></td></tr>
-
 
+
</table>
-
'''Structural Genomics, the crystal structure of a transcriptional regulator from Streptococcus pneumoniae TIGR4'''
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
2GNP is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GNP OCA].
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gn/2gnp_consurf.spt"</scriptWhenChecked>
-
[[Category: Single protein]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Streptococcus pneumoniae]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Clancy, S.]]
+
</jmolCheckbox>
-
[[Category: Duggan, E.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gnp ConSurf].
-
[[Category: Joachimiak, A.]]
+
<div style="clear:both"></div>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
__TOC__
-
[[Category: Tan, K.]]
+
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Strpn]]
 +
[[Category: Clancy, S]]
 +
[[Category: Duggan, E]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Structural genomic]]
 +
[[Category: Tan, K]]
[[Category: Apc84799]]
[[Category: Apc84799]]
[[Category: Mcsg]]
[[Category: Mcsg]]
-
[[Category: Midwest center for structural genomic]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi]]
+
[[Category: Streptococcus pneumoniae tigr4]]
[[Category: Streptococcus pneumoniae tigr4]]
-
[[Category: Structural genomic]]
+
[[Category: Unknown function]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 05:18:58 2008''
+

Current revision

Structural Genomics, the crystal structure of a transcriptional regulator from Streptococcus pneumoniae TIGR4

PDB ID 2gnp

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools