This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3ahi
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
==H320A mutant of Phosphoketolase from Bifidobacterium Breve complexed with acetyl thiamine diphosphate== | ==H320A mutant of Phosphoketolase from Bifidobacterium Breve complexed with acetyl thiamine diphosphate== | ||
| - | <StructureSection load='3ahi' size='340' side='right' caption='[[3ahi]], [[Resolution|resolution]] 2.10Å' scene=''> | + | <StructureSection load='3ahi' size='340' side='right'caption='[[3ahi]], [[Resolution|resolution]] 2.10Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3ahi]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[3ahi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"bifidobacterium_parvulorum"_reuter_1963 "bifidobacterium parvulorum" reuter 1963]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AHI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AHI FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=HTL:2-ACETYL-THIAMINE+DIPHOSPHATE'>HTL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=HTL:2-ACETYL-THIAMINE+DIPHOSPHATE'>HTL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3ahc|3ahc]], [[3ahd|3ahd]], [[3ahe|3ahe]], [[3ahf|3ahf]], [[3ahg|3ahg]], [[3ahh|3ahh]], [[3ahj|3ahj]]</td></tr> | + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3ahc|3ahc]], [[3ahd|3ahd]], [[3ahe|3ahe]], [[3ahf|3ahf]], [[3ahg|3ahg]], [[3ahh|3ahh]], [[3ahj|3ahj]]</div></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">xfp ([ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">xfp ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1685 "Bifidobacterium parvulorum" Reuter 1963])</td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Fructose-6-phosphate_phosphoketolase Fructose-6-phosphate phosphoketolase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.2.22 4.1.2.22] </span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ahi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ahi OCA], [https://pdbe.org/3ahi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ahi RCSB], [https://www.ebi.ac.uk/pdbsum/3ahi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ahi ProSAT]</span></td></tr> |
</table> | </table> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
| Line 35: | Line 35: | ||
[[Category: Bifidobacterium parvulorum reuter 1963]] | [[Category: Bifidobacterium parvulorum reuter 1963]] | ||
[[Category: Fructose-6-phosphate phosphoketolase]] | [[Category: Fructose-6-phosphate phosphoketolase]] | ||
| + | [[Category: Large Structures]] | ||
[[Category: Ashida, H]] | [[Category: Ashida, H]] | ||
[[Category: Fushinobu, S]] | [[Category: Fushinobu, S]] | ||
Revision as of 14:52, 29 December 2021
H320A mutant of Phosphoketolase from Bifidobacterium Breve complexed with acetyl thiamine diphosphate
| |||||||||||
Categories: Bifidobacterium parvulorum reuter 1963 | Fructose-6-phosphate phosphoketolase | Large Structures | Ashida, H | Fushinobu, S | Katayama, T | Kim, B J | Shoun, H | Suzuki, R | Wakagi, T | Yamamoto, K | Acetyl thiamine diphosphate | Alpha-beta fold | Homodimer | Lyase | Thiamine diphosphate-dependent enzyme

