This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2hku

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:09, 5 January 2022) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2hku.png|left|200px]]
 
-
{{STRUCTURE_2hku| PDB=2hku | SCENE= }}
+
==Structural Genomics, the crystal structure of a putative transcriptional regulator from Rhodococcus sp. RHA1==
-
 
+
<StructureSection load='2hku' size='340' side='right'caption='[[2hku]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
===Structural Genomics, the crystal structure of a putative transcriptional regulator from Rhodococcus sp. RHA1===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[2hku]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhojr Rhojr]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HKU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2HKU FirstGlance]. <br>
-
 
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr>
-
==About this Structure==
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[2hku]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodococcus_sp. Rhodococcus sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HKU OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2hku FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hku OCA], [https://pdbe.org/2hku PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2hku RCSB], [https://www.ebi.ac.uk/pdbsum/2hku PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2hku ProSAT], [https://www.topsan.org/Proteins/MCSG/2hku TOPSAN]</span></td></tr>
-
[[Category: Rhodococcus sp.]]
+
</table>
-
[[Category: Edwards, A.]]
+
== Evolutionary Conservation ==
-
[[Category: Evdokimova, E.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Joachimiak, A.]]
+
Check<jmol>
-
[[Category: Kagan, O.]]
+
<jmolCheckbox>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hk/2hku_consurf.spt"</scriptWhenChecked>
-
[[Category: Savchenko, A.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Tan, K.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2hku ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Rhojr]]
 +
[[Category: Edwards, A]]
 +
[[Category: Evdokimova, E]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Kagan, O]]
 +
[[Category: Structural genomic]]
 +
[[Category: Savchenko, A]]
 +
[[Category: Tan, K]]
[[Category: Apc6040]]
[[Category: Apc6040]]
[[Category: Mcsg]]
[[Category: Mcsg]]
-
[[Category: Midwest center for structural genomic]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
[[Category: Rhodococcus sp. rha1]]
[[Category: Rhodococcus sp. rha1]]
-
[[Category: Structural genomic]]
 
[[Category: Tetr family]]
[[Category: Tetr family]]
[[Category: Transcription regulator]]
[[Category: Transcription regulator]]
[[Category: Transcriptional regulator]]
[[Category: Transcriptional regulator]]

Current revision

Structural Genomics, the crystal structure of a putative transcriptional regulator from Rhodococcus sp. RHA1

PDB ID 2hku

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools