This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2hku

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:09, 5 January 2022) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2hku.gif|left|200px]]
 
-
{{Structure
+
==Structural Genomics, the crystal structure of a putative transcriptional regulator from Rhodococcus sp. RHA1==
-
|PDB= 2hku |SIZE=350|CAPTION= <scene name='initialview01'>2hku</scene>, resolution 2.00&Aring;
+
<StructureSection load='2hku' size='340' side='right'caption='[[2hku]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>
+
<table><tr><td colspan='2'>[[2hku]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhojr Rhojr]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HKU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2HKU FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr>
-
|GENE=
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam00440 TetR_N]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2hku FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hku OCA], [https://pdbe.org/2hku PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2hku RCSB], [https://www.ebi.ac.uk/pdbsum/2hku PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2hku ProSAT], [https://www.topsan.org/Proteins/MCSG/2hku TOPSAN]</span></td></tr>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2hku FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hku OCA], [http://www.ebi.ac.uk/pdbsum/2hku PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2hku RCSB]</span>
+
</table>
-
}}
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
'''Structural Genomics, the crystal structure of a putative transcriptional regulator from Rhodococcus sp. RHA1'''
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hk/2hku_consurf.spt"</scriptWhenChecked>
-
==About this Structure==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
2HKU is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Rhodococcus_sp. Rhodococcus sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HKU OCA].
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Protein complex]]
+
</jmolCheckbox>
-
[[Category: Rhodococcus sp.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2hku ConSurf].
-
[[Category: Edwards, A.]]
+
<div style="clear:both"></div>
-
[[Category: Evdokimova, E.]]
+
__TOC__
-
[[Category: Joachimiak, A.]]
+
</StructureSection>
-
[[Category: Kagan, O.]]
+
[[Category: Large Structures]]
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Category: Rhojr]]
-
[[Category: Savchenko, A.]]
+
[[Category: Edwards, A]]
-
[[Category: Tan, K.]]
+
[[Category: Evdokimova, E]]
-
[[Category: apc6040]]
+
[[Category: Joachimiak, A]]
-
[[Category: mcsg]]
+
[[Category: Kagan, O]]
-
[[Category: midwest center for structural genomic]]
+
[[Category: Structural genomic]]
-
[[Category: protein structure initiative]]
+
[[Category: Savchenko, A]]
-
[[Category: psi-2]]
+
[[Category: Tan, K]]
-
[[Category: rhodococcus sp. rha1]]
+
[[Category: Apc6040]]
-
[[Category: structural genomic]]
+
[[Category: Mcsg]]
-
[[Category: tetr family]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: transcriptional regulator]]
+
[[Category: Rhodococcus sp. rha1]]
-
 
+
[[Category: Tetr family]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:29:18 2008''
+
[[Category: Transcription regulator]]
 +
[[Category: Transcriptional regulator]]

Current revision

Structural Genomics, the crystal structure of a putative transcriptional regulator from Rhodococcus sp. RHA1

PDB ID 2hku

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools