This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2ikb

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:28, 12 January 2022) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2ikb.gif|left|200px]]
 
-
{{Structure
+
==Crystal Structure of a Protein of Unknown Function NMB1012 from Neisseria meningitidis==
-
|PDB= 2ikb |SIZE=350|CAPTION= <scene name='initialview01'>2ikb</scene>, resolution 1.70&Aring;
+
<StructureSection load='2ikb' size='340' side='right'caption='[[2ikb]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
+
<table><tr><td colspan='2'>[[2ikb]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Neimb Neimb]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IKB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IKB FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|GENE=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ikb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ikb OCA], [https://pdbe.org/2ikb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ikb RCSB], [https://www.ebi.ac.uk/pdbsum/2ikb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ikb ProSAT], [https://www.topsan.org/Proteins/MCSG/2ikb TOPSAN]</span></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam05838 DUF847], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam09374 PG_binding_3]</span>
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ikb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ikb OCA], [http://www.ebi.ac.uk/pdbsum/2ikb PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2ikb RCSB]</span>
+
== Evolutionary Conservation ==
-
}}
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
'''Crystal Structure of a Protein of Unknown Function NMB1012 from Neisseria meningitidis'''
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ik/2ikb_consurf.spt"</scriptWhenChecked>
-
 
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
==About this Structure==
+
<text>to colour the structure by Evolutionary Conservation</text>
-
2IKB is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Neisseria_meningitidis_serogroup_b Neisseria meningitidis serogroup b]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IKB OCA].
+
</jmolCheckbox>
-
[[Category: Neisseria meningitidis serogroup b]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ikb ConSurf].
-
[[Category: Single protein]]
+
<div style="clear:both"></div>
-
[[Category: Bargassa, M.]]
+
__TOC__
-
[[Category: Joachimiak, A.]]
+
</StructureSection>
-
[[Category: Li, H.]]
+
[[Category: Large Structures]]
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Category: Neimb]]
-
[[Category: Zhang, R.]]
+
[[Category: Bargassa, M]]
-
[[Category: mcsg]]
+
[[Category: Joachimiak, A]]
-
[[Category: midwest center for structural genomic]]
+
[[Category: Li, H]]
-
[[Category: neisseria meningitidi]]
+
[[Category: Structural genomic]]
-
[[Category: protein structure initiative]]
+
[[Category: Zhang, R]]
-
[[Category: psi-2]]
+
[[Category: Mcsg]]
-
[[Category: structural genomic]]
+
[[Category: Neisseria meningitidi]]
-
 
+
[[Category: PSI, Protein structure initiative]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:32:16 2008''
+
[[Category: Unknown function]]

Current revision

Crystal Structure of a Protein of Unknown Function NMB1012 from Neisseria meningitidis

PDB ID 2ikb

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2ikb"
Personal tools