This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2ikk
From Proteopedia
(Difference between revisions)
| (12 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2ikk.jpg|left|200px]] | ||
| - | + | ==Structural Genomics, the crystal structure of the C-terminal domain of Yurk from Bacillus subtilis subsp. subtilis str. 168== | |
| - | + | <StructureSection load='2ikk' size='340' side='right'caption='[[2ikk]], [[Resolution|resolution]] 1.80Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[2ikk]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IKK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IKK FirstGlance]. <br> | |
| - | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | |
| - | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
| - | | | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ikk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ikk OCA], [https://pdbe.org/2ikk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ikk RCSB], [https://www.ebi.ac.uk/pdbsum/2ikk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ikk ProSAT], [https://www.topsan.org/Proteins/MCSG/2ikk TOPSAN]</span></td></tr> |
| - | + | </table> | |
| - | + | == Evolutionary Conservation == | |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | + | Check<jmol> | |
| - | + | <jmolCheckbox> | |
| - | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ik/2ikk_consurf.spt"</scriptWhenChecked> | |
| - | == | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | + | <text>to colour the structure by Evolutionary Conservation</text> | |
| - | [[Category: | + | </jmolCheckbox> |
| - | [[Category: | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ikk ConSurf]. |
| - | [[Category: Abdullah, J | + | <div style="clear:both"></div> |
| - | [[Category: Hatzos, C | + | __TOC__ |
| - | [[Category: Joachimiak, A | + | </StructureSection> |
| - | [[Category: | + | [[Category: Vibrio subtilis ehrenberg 1835]] |
| - | [[Category: Tan, K | + | [[Category: Large Structures]] |
| - | [[Category: | + | [[Category: Abdullah, J]] |
| - | [[Category: | + | [[Category: Hatzos, C]] |
| - | [[Category: | + | [[Category: Joachimiak, A]] |
| - | [[Category: | + | [[Category: Structural genomic]] |
| - | + | [[Category: Tan, K]] | |
| - | [[Category: | + | [[Category: Apc85442]] |
| - | [[Category: | + | [[Category: Bacillus subtilis subsp. subtilis str. 168]] |
| - | + | [[Category: Mcsg]] | |
| - | + | [[Category: PSI, Protein structure initiative]] | |
| - | + | [[Category: Unknown function]] | |
| + | [[Category: Yurk]] | ||
Current revision
Structural Genomics, the crystal structure of the C-terminal domain of Yurk from Bacillus subtilis subsp. subtilis str. 168
| |||||||||||
