This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3bij

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:43, 12 January 2022) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3bij.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of protein GSU0716 from Geobacter sulfurreducens. Northeast Structural Genomics target GsR13==
-
|PDB= 3bij |SIZE=350|CAPTION= <scene name='initialview01'>3bij</scene>, resolution 2.50&Aring;
+
<StructureSection load='3bij' size='340' side='right'caption='[[3bij]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
+
<table><tr><td colspan='2'>[[3bij]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Geosl Geosl]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BIJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BIJ FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|GENE= GSU0716, 2687216 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243231 Geobacter sulfurreducens PCA])
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GSU0716, 2687216 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243231 GEOSL])</td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bij FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bij OCA], [https://pdbe.org/3bij PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bij RCSB], [https://www.ebi.ac.uk/pdbsum/3bij PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bij ProSAT], [https://www.topsan.org/Proteins/NESGC/3bij TOPSAN]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bij FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bij OCA], [http://www.ebi.ac.uk/pdbsum/3bij PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3bij RCSB]</span>
+
== Evolutionary Conservation ==
-
}}
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
'''Crystal structure of protein GSU0716 from Geobacter sulfurreducens. Northeast Structural Genomics target GsR13'''
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bi/3bij_consurf.spt"</scriptWhenChecked>
-
 
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
==About this Structure==
+
<text>to colour the structure by Evolutionary Conservation</text>
-
3BIJ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Geobacter_sulfurreducens_pca Geobacter sulfurreducens pca]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BIJ OCA].
+
</jmolCheckbox>
-
[[Category: Geobacter sulfurreducens pca]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bij ConSurf].
-
[[Category: Single protein]]
+
<div style="clear:both"></div>
-
[[Category: Acton, T B.]]
+
__TOC__
-
[[Category: Baran, M C.]]
+
</StructureSection>
-
[[Category: Benach, J.]]
+
[[Category: Geosl]]
-
[[Category: Conover, K.]]
+
[[Category: Large Structures]]
-
[[Category: Cunningham, K.]]
+
[[Category: Acton, T B]]
-
[[Category: Fang, Y.]]
+
[[Category: Baran, M C]]
-
[[Category: Forouhar, F.]]
+
[[Category: Benach, J]]
-
[[Category: Hunt, J F.]]
+
[[Category: Conover, K]]
-
[[Category: Maglaqui, M.]]
+
[[Category: Cunningham, K]]
-
[[Category: Montelione, G T.]]
+
[[Category: Fang, Y]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Forouhar, F]]
-
[[Category: Neely, H.]]
+
[[Category: Hunt, J F]]
-
[[Category: Owen, L A.]]
+
[[Category: Maglaqui, M]]
-
[[Category: Seetharaman, J.]]
+
[[Category: Montelione, G T]]
-
[[Category: Su, M.]]
+
[[Category: Structural genomic]]
-
[[Category: Tong, L.]]
+
[[Category: Neely, H]]
-
[[Category: Xiao, R.]]
+
[[Category: Owen, L A]]
-
[[Category: alpha-beta protein]]
+
[[Category: Seetharaman, J]]
-
[[Category: nesg]]
+
[[Category: Su, M]]
-
[[Category: northeast structural genomics consortium]]
+
[[Category: Tong, L]]
-
[[Category: protein structure initiative]]
+
[[Category: Xiao, R]]
-
[[Category: psi-2]]
+
[[Category: Alpha-beta protein]]
-
[[Category: structural genomic]]
+
[[Category: Nesg]]
-
[[Category: unknown function]]
+
[[Category: PSI, Protein structure initiative]]
-
 
+
[[Category: Unknown function]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:26:40 2008''
+

Current revision

Crystal structure of protein GSU0716 from Geobacter sulfurreducens. Northeast Structural Genomics target GsR13

PDB ID 3bij

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools