This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2j43

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:01, 19 January 2022) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2j43.gif|left|200px]]<br /><applet load="2j43" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2j43, resolution 1.60&Aring;" />
 
-
'''ALPHA-GLUCAN RECOGNITION BY FAMILY 41 CARBOHYDRATE-BINDING MODULES FROM STREPTOCOCCAL VIRULENCE FACTORS'''<br />
 
-
==About this Structure==
+
==Alpha-glucan recognition by family 41 carbohydrate-binding modules from streptococcal virulence factors==
-
2J43 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Streptococcus_pyogenes Streptococcus pyogenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2J43 OCA].
+
<StructureSection load='2j43' size='340' side='right'caption='[[2j43]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-
[[Category: Single protein]]
+
== Structural highlights ==
-
[[Category: Streptococcus pyogenes]]
+
<table><tr><td colspan='2'>[[2j43]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"micrococcus_scarlatinae"_klein_1884 "micrococcus scarlatinae" klein 1884]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2J43 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2J43 FirstGlance]. <br>
-
[[Category: Boraston, A B.]]
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[Category: Bueren, A Lammerts Van.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2j43 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2j43 OCA], [https://pdbe.org/2j43 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2j43 RCSB], [https://www.ebi.ac.uk/pdbsum/2j43 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2j43 ProSAT]</span></td></tr>
-
[[Category: Burke, R D.]]
+
</table>
-
[[Category: Higgins, M.]]
+
== Evolutionary Conservation ==
-
[[Category: Wang, D.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: carbohydrate-binding module]]
+
Check<jmol>
-
[[Category: family 41]]
+
<jmolCheckbox>
-
[[Category: glycogen binding]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j4/2j43_consurf.spt"</scriptWhenChecked>
-
[[Category: glycoside hydrolase]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: pullulanase]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: streptococcal]]
+
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2j43 ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The ability of pathogenic bacteria to recognize host glycans is often essential to their virulence. Here we report structure-function studies of previously uncharacterized glycogen-binding modules in the surface-anchored pullulanases from Streptococcus pneumoniae (SpuA) and Streptococcus pyogenes (PulA). Multivalent binding to glycogen leads to a strong interaction with alveolar type II cells in mouse lung tissue. X-ray crystal structures of the binding modules reveal a novel fusion of tandem modules into single, bivalent functional domains. In addition to indicating a structural basis for multivalent attachment, the structure of the SpuA modules in complex with carbohydrate provides insight into the molecular basis for glycogen specificity. This report provides the first evidence that intracellular lung glycogen may be a novel target of pathogenic streptococci and thus provides a rationale for the identification of the streptococcal alpha-glucan-metabolizing machinery as virulence factors.
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 17:58:58 2008''
+
Identification and structural basis of binding to host lung glycogen by streptococcal virulence factors.,van Bueren AL, Higgins M, Wang D, Burke RD, Boraston AB Nat Struct Mol Biol. 2007 Jan;14(1):76-84. Epub 2006 Dec 24. PMID:17187076<ref>PMID:17187076</ref>
 +
 
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 2j43" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Micrococcus scarlatinae klein 1884]]
 +
[[Category: Large Structures]]
 +
[[Category: Boraston, A B]]
 +
[[Category: Bueren, A Lammerts van]]
 +
[[Category: Burke, R D]]
 +
[[Category: Higgins, M]]
 +
[[Category: Wang, D]]
 +
[[Category: Carbohydrate-binding module]]
 +
[[Category: Family 41]]
 +
[[Category: Glycogen binding]]
 +
[[Category: Glycoside hydrolase]]
 +
[[Category: Pullulanase]]
 +
[[Category: Streptococcal]]

Current revision

Alpha-glucan recognition by family 41 carbohydrate-binding modules from streptococcal virulence factors

PDB ID 2j43

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools