This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3bqy
From Proteopedia
(Difference between revisions)
| (11 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:3bqy.jpg|left|200px]]<br /><applet load="3bqy" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="3bqy, resolution 1.950Å" /> | ||
| - | '''Crystal structure of a possible TetR family transcriptional regulator from Streptomyces coelicolor A3(2).'''<br /> | ||
| - | == | + | ==Crystal structure of a possible TetR family transcriptional regulator from Streptomyces coelicolor A3(2).== |
| - | + | <StructureSection load='3bqy' size='340' side='right'caption='[[3bqy]], [[Resolution|resolution]] 1.95Å' scene=''> | |
| - | [[ | + | == Structural highlights == |
| - | [[ | + | <table><tr><td colspan='2'>[[3bqy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Strco Strco]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BQY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BQY FirstGlance]. <br> |
| - | [[ | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> |
| - | [ | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | [[ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SCO0250, SCJ9A.29 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=100226 STRCO])</td></tr> |
| - | [[Category: | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bqy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bqy OCA], [https://pdbe.org/3bqy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bqy RCSB], [https://www.ebi.ac.uk/pdbsum/3bqy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bqy ProSAT], [https://www.topsan.org/Proteins/MCSG/3bqy TOPSAN]</span></td></tr> |
| - | [[Category: | + | </table> |
| - | [[Category: | + | == Evolutionary Conservation == |
| - | [[Category: | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [[Category: | + | Check<jmol> |
| - | [[Category: | + | <jmolCheckbox> |
| - | [[Category: | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bq/3bqy_consurf.spt"</scriptWhenChecked> |
| - | [[Category: | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: | + | </jmolCheckbox> |
| - | [[Category: | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bqy ConSurf]. |
| - | [[Category: | + | <div style="clear:both"></div> |
| - | [[Category: | + | __TOC__ |
| - | [[Category: | + | </StructureSection> |
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: | + | [[Category: Strco]] |
| - | [[Category: | + | [[Category: Cuff, M E]] |
| - | + | [[Category: Edwards, A M]] | |
| - | + | [[Category: Joachimiak, A]] | |
| + | [[Category: Kagan, O]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Savchenko, A]] | ||
| + | [[Category: Skarina, T]] | ||
| + | [[Category: Dna-binding]] | ||
| + | [[Category: Mcsg]] | ||
| + | [[Category: PSI, Protein structure initiative]] | ||
| + | [[Category: Streptomyces coelicolor]] | ||
| + | [[Category: Tetr]] | ||
| + | [[Category: Transcription regulation]] | ||
| + | [[Category: Transcription regulator]] | ||
| + | [[Category: Transcriptional regulator]] | ||
Current revision
Crystal structure of a possible TetR family transcriptional regulator from Streptomyces coelicolor A3(2).
| |||||||||||
Categories: Large Structures | Strco | Cuff, M E | Edwards, A M | Joachimiak, A | Kagan, O | Structural genomic | Savchenko, A | Skarina, T | Dna-binding | Mcsg | PSI, Protein structure initiative | Streptomyces coelicolor | Tetr | Transcription regulation | Transcription regulator | Transcriptional regulator

