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3bss
From Proteopedia
(Difference between revisions)
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==PglD from Campylobacter jejuni, NCTC 11168, with native substrate== | ==PglD from Campylobacter jejuni, NCTC 11168, with native substrate== | ||
| - | <StructureSection load='3bss' size='340' side='right' caption='[[3bss]], [[Resolution|resolution]] 2.30Å' scene=''> | + | <StructureSection load='3bss' size='340' side='right'caption='[[3bss]], [[Resolution|resolution]] 2.30Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3bss]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[3bss]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"campylobacter_fetus_subsp._jejuni"_smibert_1974 "campylobacter fetus subsp. jejuni" smibert 1974]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BSS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BSS FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=UD4:UDP-2-ACETAMIDO-4-AMINO-2,4,6-TRIDEOXY-ALPHA-D-GLUCOPYRANOSE'>UD4</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=UD4:UDP-2-ACETAMIDO-4-AMINO-2,4,6-TRIDEOXY-ALPHA-D-GLUCOPYRANOSE'>UD4</scene></td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2npo|2npo]], [[3bsw|3bsw]], [[3bsy|3bsy]]</td></tr> | + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2npo|2npo]], [[3bsw|3bsw]], [[3bsy|3bsy]]</div></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pglD ([ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pglD ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=197 "Campylobacter fetus subsp. jejuni" Smibert 1974])</td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/UDP-N-acetylglucosamine_diphosphorylase UDP-N-acetylglucosamine diphosphorylase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.23 2.7.7.23] </span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bss FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bss OCA], [https://pdbe.org/3bss PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bss RCSB], [https://www.ebi.ac.uk/pdbsum/3bss PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bss ProSAT]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
| - | [[ | + | [[https://www.uniprot.org/uniprot/PGLD_CAMJE PGLD_CAMJE]] Acetyltransferase that modifies the UDP-4-amino-sugar to form UDP-N,N'-diacetylbacillosamine in the N-linked protein glycosylation pathway.<ref>PMID:17087520</ref> <ref>PMID:19448740</ref> |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bs/3bss_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bs/3bss_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
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</StructureSection> | </StructureSection> | ||
[[Category: Campylobacter fetus subsp. jejuni smibert 1974]] | [[Category: Campylobacter fetus subsp. jejuni smibert 1974]] | ||
| + | [[Category: Large Structures]] | ||
[[Category: UDP-N-acetylglucosamine diphosphorylase]] | [[Category: UDP-N-acetylglucosamine diphosphorylase]] | ||
[[Category: Imperiali, B]] | [[Category: Imperiali, B]] | ||
Revision as of 08:24, 19 January 2022
PglD from Campylobacter jejuni, NCTC 11168, with native substrate
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Categories: Campylobacter fetus subsp. jejuni smibert 1974 | Large Structures | UDP-N-acetylglucosamine diphosphorylase | Imperiali, B | Olivier, N B | Acetyl coenzyme z | Bacillosamine | Campylobacter | Hexapeptide repeat | Left-hand beta helix | N-linked glycosylation | Pgl | Rossmann fold | Transferase | Udp

