3byw

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[[Image:3byw.jpg|left|200px]]
 
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{{Structure
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==Crystal structure of an extracellular domain of arabinofuranosyltransferase from Corynebacterium diphtheriae==
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|PDB= 3byw |SIZE=350|CAPTION= <scene name='initialview01'>3byw</scene>, resolution 2.35&Aring;
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<StructureSection load='3byw' size='340' side='right'caption='[[3byw]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
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|SITE= <scene name='pdbsite=AC1:Zn+Binding+Site+For+Residue+D+1'>AC1</scene>, <scene name='pdbsite=AC2:Zn+Binding+Site+For+Residue+C+2'>AC2</scene>, <scene name='pdbsite=AC3:Zn+Binding+Site+For+Residue+E+3'>AC3</scene>, <scene name='pdbsite=AC4:Zn+Binding+Site+For+Residue+F+4'>AC4</scene>, <scene name='pdbsite=AC5:Zn+Binding+Site+For+Residue+G+5'>AC5</scene>, <scene name='pdbsite=AC6:Zn+Binding+Site+For+Residue+B+6'>AC6</scene>, <scene name='pdbsite=AC7:Zn+Binding+Site+For+Residue+A+7'>AC7</scene>, <scene name='pdbsite=AC8:Zn+Binding+Site+For+Residue+E+9'>AC8</scene>, <scene name='pdbsite=AC9:Zn+Binding+Site+For+Residue+E+10'>AC9</scene>, <scene name='pdbsite=BC1:Zn+Binding+Site+For+Residue+F+11'>BC1</scene>, <scene name='pdbsite=BC2:Zn+Binding+Site+For+Residue+D+13'>BC2</scene>, <scene name='pdbsite=BC3:Zn+Binding+Site+For+Residue+A+14'>BC3</scene>, <scene name='pdbsite=BC4:Zn+Binding+Site+For+Residue+C+16'>BC4</scene>, <scene name='pdbsite=BC5:Zn+Binding+Site+For+Residue+D+18'>BC5</scene>, <scene name='pdbsite=BC6:Zn+Binding+Site+For+Residue+E+19'>BC6</scene>, <scene name='pdbsite=BC7:Act+Binding+Site+For+Residue+B+1'>BC7</scene>, <scene name='pdbsite=BC8:Act+Binding+Site+For+Residue+D+2'>BC8</scene>, <scene name='pdbsite=BC9:Act+Binding+Site+For+Residue+G+3'>BC9</scene>, <scene name='pdbsite=CC1:Act+Binding+Site+For+Residue+E+4'>CC1</scene>, <scene name='pdbsite=CC2:Act+Binding+Site+For+Residue+E+5'>CC2</scene>, <scene name='pdbsite=CC3:Act+Binding+Site+For+Residue+C+6'>CC3</scene>, <scene name='pdbsite=CC4:Act+Binding+Site+For+Residue+D+8'>CC4</scene>, <scene name='pdbsite=CC5:Act+Binding+Site+For+Residue+B+9'>CC5</scene>, <scene name='pdbsite=CC6:Act+Binding+Site+For+Residue+H+10'>CC6</scene>, <scene name='pdbsite=CC7:Act+Binding+Site+For+Residue+D+11'>CC7</scene>, <scene name='pdbsite=CC8:Act+Binding+Site+For+Residue+A+12'>CC8</scene>, <scene name='pdbsite=CC9:Act+Binding+Site+For+Residue+B+13'>CC9</scene> and <scene name='pdbsite=DC1:Act+Binding+Site+For+Residue+E+14'>DC1</scene>
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>
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<table><tr><td colspan='2'>[[3byw]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Cordi Cordi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BYW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BYW FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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|GENE= DIP0159 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=257309 Corynebacterium diphtheriae NCTC 13129])
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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|DOMAIN=
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">DIP0159 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=257309 CORDI])</td></tr>
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|RELATEDENTRY=
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3byw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3byw OCA], [https://pdbe.org/3byw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3byw RCSB], [https://www.ebi.ac.uk/pdbsum/3byw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3byw ProSAT], [https://www.topsan.org/Proteins/MCSG/3byw TOPSAN]</span></td></tr>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3byw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3byw OCA], [http://www.ebi.ac.uk/pdbsum/3byw PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3byw RCSB]</span>
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</table>
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}}
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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'''Crystal structure of an extracellular domain of arabinofuranosyltransferase from Corynebacterium diphtheriae'''
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/by/3byw_consurf.spt"</scriptWhenChecked>
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==About this Structure==
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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3BYW is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Corynebacterium_diphtheriae_nctc_13129 Corynebacterium diphtheriae nctc 13129]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BYW OCA].
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: Corynebacterium diphtheriae nctc 13129]]
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</jmolCheckbox>
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[[Category: Single protein]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3byw ConSurf].
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[[Category: Abdullah, J.]]
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<div style="clear:both"></div>
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[[Category: Hatzos, C.]]
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__TOC__
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[[Category: Joachimiak, A.]]
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</StructureSection>
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[[Category: MCSG, Midwest Center for Structural Genomics.]]
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[[Category: Cordi]]
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[[Category: Tan, K.]]
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[[Category: Large Structures]]
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[[Category: apc90585 2]]
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[[Category: Abdullah, J]]
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[[Category: arabinofuranosyltransferase]]
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[[Category: Hatzos, C]]
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[[Category: corynebacterium diphtheriae]]
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[[Category: Joachimiak, A]]
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[[Category: extracellular domain]]
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[[Category: Structural genomic]]
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[[Category: mcsg]]
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[[Category: Tan, K]]
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[[Category: midwest center for structural genomic]]
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[[Category: Apc90585 2]]
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[[Category: protein structure initiative]]
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[[Category: Arabinofuranosyltransferase]]
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[[Category: psi-2]]
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[[Category: Corynebacterium diphtheriae]]
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[[Category: structural genomic]]
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[[Category: Extracellular domain]]
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[[Category: Mcsg]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:29:46 2008''
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[[Category: PSI, Protein structure initiative]]
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[[Category: Transferase]]

Current revision

Crystal structure of an extracellular domain of arabinofuranosyltransferase from Corynebacterium diphtheriae

PDB ID 3byw

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