Test Interactivity
From Proteopedia
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==Your Heading Here (maybe something like 'Structure')== | ==Your Heading Here (maybe something like 'Structure')== | ||
| - | <StructureSection load='1eve' size='340' side='right' caption='1eve' scene=''> | + | <StructureSection load='1eve' size='340' side='right' caption='1eve' scene='90/902041/Protein_and_ligand/2'> |
This is a default text for your page '''Test Interactivity'''. Click above on '''edit this page''' to modify. Be careful with the < and > signs. | This is a default text for your page '''Test Interactivity'''. Click above on '''edit this page''' to modify. Be careful with the < and > signs. | ||
You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue. | You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue. | ||
== Function == | == Function == | ||
| - | + | To show ligand(s), click on the sun symbol in the parentheses (<jmol> | |
| + | <jmolLink> | ||
| + | <script> select E20; selectionHalos ON; | ||
| + | delay 0.5; selectionHalos OFF;</script> | ||
| + | <text>☼</text> | ||
| + | </jmolLink> | ||
| + | </jmol>) | ||
| + | |||
| + | <jmol> | ||
| + | <jmolLink> | ||
| + | <script> | ||
| + | define current selected; | ||
| + | select E20; | ||
| + | selectionHalos on; | ||
| + | delay 0.5; | ||
| + | selectionHalos off; | ||
| + | select current; | ||
| + | </script> | ||
| + | <text>on/off</text> | ||
| + | </jmolLink> | ||
| + | </jmol> | ||
| + | |||
| + | |||
| + | <jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenUnChecked>hide E20 or hidden | ||
| + | </scriptWhenUnChecked> | ||
| + | <scriptWhenchecked>hide hidden and not (E20) | ||
| + | </scriptWhenchecked> | ||
| + | <checked>true</checked> | ||
| + | <text>ligand</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol> | ||
| + | |||
| + | |||
| + | <jmol> | ||
| + | <jmolRadioGroup> | ||
| + | <item> | ||
| + | <script>select sidechain; spacefill off; | ||
| + | select sidechain and 84; spacefill on; color magenta</script> | ||
| + | <text>Residue 84</text> | ||
| + | <checked>false</checked> | ||
| + | </item> | ||
| + | <item> | ||
| + | <script>select sidechain; spacefill off; | ||
| + | select sidechain and 330; spacefill on; color magenta</script> | ||
| + | <text>Residue 330</text> | ||
| + | <checked>false</checked> | ||
| + | </item> | ||
| + | <item> | ||
| + | <script>select sidechain; spacefill off</script> | ||
| + | <text>No side chains</text> | ||
| + | <checked>true</checked> | ||
| + | </item> | ||
| + | </jmolRadioGroup> | ||
| + | </jmol> | ||
| + | |||
| + | |||
== Disease == | == Disease == | ||
Current revision
Your Heading Here (maybe something like 'Structure')
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References
- ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
- ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
