This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3bzd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:37, 27 January 2022) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3bzd.jpg|left|200px]]
 
-
<!--
+
==Manipulating the coupled folding and binding process drives affinity maturation in a protein-protein complex==
-
The line below this paragraph, containing "STRUCTURE_3bzd", creates the "Structure Box" on the page.
+
<StructureSection load='3bzd' size='340' side='right'caption='[[3bzd]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3bzd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"micrococcus_aureus"_(rosenbach_1884)_zopf_1885 "micrococcus aureus" (rosenbach 1884) zopf 1885] and [https://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BZD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BZD FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
-->
+
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3byy|3byy]], [[3byt|3byt]], [[3bvg|3bvg]], [[3bvm|3bvm]], [[3bvz|3bvz]]</div></td></tr>
-
{{STRUCTURE_3bzd| PDB=3bzd | SCENE= }}
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">entC3 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1280 "Micrococcus aureus" (Rosenbach 1884) Zopf 1885])</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bzd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bzd OCA], [https://pdbe.org/3bzd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bzd RCSB], [https://www.ebi.ac.uk/pdbsum/3bzd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bzd ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[[https://www.uniprot.org/uniprot/ENTC3_STAAU ENTC3_STAAU]] Staphylococcal enterotoxins cause the intoxication staphylococcal food poisoning syndrome. The illness is characterized by high fever, hypotension, diarrhea, shock, and in some cases death.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bz/3bzd_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bzd ConSurf].
 +
<div style="clear:both"></div>
-
===Manipulating the coupled folding and binding process drives affinity maturation in a protein-protein complex===
+
==See Also==
-
 
+
*[[T-cell receptor 3D structures|T-cell receptor 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
3BZD is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus] and [http://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BZD OCA].
+
[[Category: Large Structures]]
-
[[Category: Mus musculus]]
+
[[Category: Lk3 transgenic mice]]
-
[[Category: Staphylococcus aureus]]
+
[[Category: Cho, S]]
-
[[Category: Cho, S.]]
+
[[Category: Secreted]]
[[Category: Secreted]]
[[Category: Superantigen]]
[[Category: Superantigen]]
[[Category: Toxin]]
[[Category: Toxin]]
- 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 13 10:25:13 2009''
 

Current revision

Manipulating the coupled folding and binding process drives affinity maturation in a protein-protein complex

PDB ID 3bzd

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools