This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3c0d

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:38, 27 January 2022) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3c0d.png|left|200px]]
 
-
<!--
+
==Crystal structure of the putative nitrite reductase NADPH (small subunit) oxidoreductase protein Q87HB1. Northeast Structural Genomics Consortium target VpR162==
-
The line below this paragraph, containing "STRUCTURE_3c0d", creates the "Structure Box" on the page.
+
<StructureSection load='3c0d' size='340' side='right'caption='[[3c0d]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3c0d]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibpa Vibpa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C0D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C0D FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
-->
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VPA1054 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=223926 VIBPA])</td></tr>
-
{{STRUCTURE_3c0d| PDB=3c0d | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c0d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c0d OCA], [https://pdbe.org/3c0d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c0d RCSB], [https://www.ebi.ac.uk/pdbsum/3c0d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c0d ProSAT], [https://www.topsan.org/Proteins/NESGC/3c0d TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of the putative nitrite reductase NADPH (small subunit) oxidoreductase protein Q87HB1. Northeast Structural Genomics Consortium target VpR162===
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
3C0D is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_rimd_2210633 Vibrio parahaemolyticus rimd 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C0D OCA].
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c0/3c0d_consurf.spt"</scriptWhenChecked>
-
[[Category: Single protein]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Vibrio parahaemolyticus rimd 2210633]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Abashidze, M.]]
+
</jmolCheckbox>
-
[[Category: Acton, T B.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c0d ConSurf].
-
[[Category: Baran, M C.]]
+
<div style="clear:both"></div>
-
[[Category: Fang, Y.]]
+
__TOC__
-
[[Category: Hunt, J F.]]
+
</StructureSection>
-
[[Category: Kuzin, A P.]]
+
[[Category: Large Structures]]
-
[[Category: Liu, J.]]
+
[[Category: Vibpa]]
-
[[Category: Ma, L-C.]]
+
[[Category: Abashidze, M]]
-
[[Category: Montelione, G T.]]
+
[[Category: Acton, T B]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Baran, M C]]
-
[[Category: Owens, L.]]
+
[[Category: Fang, Y]]
-
[[Category: Rost, B.]]
+
[[Category: Hunt, J F]]
-
[[Category: Seetharaman, J.]]
+
[[Category: Kuzin, A P]]
-
[[Category: Tong, L.]]
+
[[Category: Liu, J]]
-
[[Category: Vorobiev, S M.]]
+
[[Category: Ma, L C]]
-
[[Category: Wang, D.]]
+
[[Category: Montelione, G T]]
-
[[Category: Xiao, R.]]
+
[[Category: Structural genomic]]
 +
[[Category: Owens, L]]
 +
[[Category: Rost, B]]
 +
[[Category: Seetharaman, J]]
 +
[[Category: Tong, L]]
 +
[[Category: Vorobiev, S M]]
 +
[[Category: Wang, D]]
 +
[[Category: Xiao, R]]
[[Category: Nesg]]
[[Category: Nesg]]
-
[[Category: Northeast structural genomics consortium]]
 
[[Category: Oxidoreductase]]
[[Category: Oxidoreductase]]
-
[[Category: Protein structure initiative]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Psi-2]]
+
[[Category: Q87hb1]]
[[Category: Q87hb1]]
-
[[Category: Structural genomic]]
 
-
[[Category: Structure]]
 
[[Category: Vpr162]]
[[Category: Vpr162]]
[[Category: Xray]]
[[Category: Xray]]
- 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Sep 28 20:16:31 2008''
 

Current revision

Crystal structure of the putative nitrite reductase NADPH (small subunit) oxidoreductase protein Q87HB1. Northeast Structural Genomics Consortium target VpR162

PDB ID 3c0d

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3c0d"
Personal tools