This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3c0u

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:38, 27 January 2022) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3c0u.jpg|left|200px]]
 
-
{{Structure
+
==Crystal structure of E.coli yaeQ protein==
-
|PDB= 3c0u |SIZE=350|CAPTION= <scene name='initialview01'>3c0u</scene>, resolution 2.70&Aring;
+
<StructureSection load='3c0u' size='340' side='right'caption='[[3c0u]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
-
|SITE= <scene name='pdbsite=AC1:So4+Binding+Site+For+Residue+A+201'>AC1</scene> and <scene name='pdbsite=AC2:So4+Binding+Site+For+Residue+B+202'>AC2</scene>
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene> and <scene name='pdbligand=CL:CHLORIDE ION'>CL</scene>
+
<table><tr><td colspan='2'>[[3c0u]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C0U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C0U FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
|GENE= yaeQ, b0190, JW0186 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=498388 Escherichia coli C])
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
}}
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">yaeQ, b0190, JW0186 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c0u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c0u OCA], [https://pdbe.org/3c0u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c0u RCSB], [https://www.ebi.ac.uk/pdbsum/3c0u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c0u ProSAT], [https://www.topsan.org/Proteins/MCSG/3c0u TOPSAN]</span></td></tr>
-
'''Crystal structure of E.coli yaeQ protein'''
+
</table>
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
3C0U is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_c Escherichia coli c]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C0U OCA].
+
<jmolCheckbox>
-
[[Category: Escherichia coli c]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c0/3c0u_consurf.spt"</scriptWhenChecked>
-
[[Category: Single protein]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Chang, C.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Edwards, A M.]]
+
</jmolCheckbox>
-
[[Category: Evdokimova, E.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c0u ConSurf].
-
[[Category: Joachimiak, A.]]
+
<div style="clear:both"></div>
-
[[Category: Kudritska, M.]]
+
__TOC__
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
</StructureSection>
-
[[Category: Savchenko, A.]]
+
[[Category: Ecoli]]
-
[[Category: CL]]
+
[[Category: Large Structures]]
-
[[Category: SO4]]
+
[[Category: Chang, C]]
-
[[Category: escherichia coli]]
+
[[Category: Edwards, A M]]
-
[[Category: mcsg]]
+
[[Category: Evdokimova, E]]
-
[[Category: midwest center for structural genomic]]
+
[[Category: Joachimiak, A]]
-
[[Category: protein structure initiative]]
+
[[Category: Kudritska, M]]
-
[[Category: psi-2]]
+
[[Category: Structural genomic]]
-
[[Category: structural genomic]]
+
[[Category: Savchenko, A]]
-
[[Category: unknown function]]
+
[[Category: Escherichia coli]]
-
[[Category: yaeq]]
+
[[Category: Mcsg]]
-
 
+
[[Category: PSI, Protein structure initiative]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 19:02:05 2008''
+
[[Category: Unknown function]]
 +
[[Category: Yaeq]]

Current revision

Crystal structure of E.coli yaeQ protein

PDB ID 3c0u

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3c0u"
Personal tools