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3c5m
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="3c5m" size="350" color="white" frame="true" align="right" spinBox="true" caption="3c5m, resolution 2.60Å" /> '''Crystal structure of...) |
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| - | [[Image:3c5m.jpg|left|200px]]<br /><applet load="3c5m" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="3c5m, resolution 2.60Å" /> | ||
| - | '''Crystal structure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199'''<br /> | ||
| - | == | + | ==Crystal structure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199== |
| - | + | <StructureSection load='3c5m' size='340' side='right'caption='[[3c5m]], [[Resolution|resolution]] 2.60Å' scene=''> | |
| - | [[ | + | == Structural highlights == |
| - | [[Category: | + | <table><tr><td colspan='2'>[[3c5m]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibpa Vibpa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C5M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C5M FirstGlance]. <br> |
| - | [[Category: Abashidze, M | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr> |
| - | [[Category: Acton, T B | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | [[Category: Baran, M C | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VPA0088 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=223926 VIBPA])</td></tr> |
| - | [[Category: Forouhar, F | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c5m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c5m OCA], [https://pdbe.org/3c5m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c5m RCSB], [https://www.ebi.ac.uk/pdbsum/3c5m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c5m ProSAT], [https://www.topsan.org/Proteins/NESGC/3c5m TOPSAN]</span></td></tr> |
| - | [[Category: Hunt, J F | + | </table> |
| - | [[Category: Janjua, H | + | == Evolutionary Conservation == |
| - | [[Category: Mao, L | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [[Category: Montelione, G T | + | Check<jmol> |
| - | [[Category: | + | <jmolCheckbox> |
| - | [[Category: Owens, L A | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c5/3c5m_consurf.spt"</scriptWhenChecked> |
| - | [[Category: Seetharaman, J | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: Tong, L | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: Wang, D | + | </jmolCheckbox> |
| - | [[Category: Xiao, R | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c5m ConSurf]. |
| - | [[Category: | + | <div style="clear:both"></div> |
| - | + | __TOC__ | |
| - | [[Category: | + | </StructureSection> |
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: | + | [[Category: Vibpa]] |
| - | + | [[Category: Abashidze, M]] | |
| - | + | [[Category: Acton, T B]] | |
| - | + | [[Category: Baran, M C]] | |
| - | + | [[Category: Forouhar, F]] | |
| - | + | [[Category: Hunt, J F]] | |
| + | [[Category: Janjua, H]] | ||
| + | [[Category: Mao, L]] | ||
| + | [[Category: Montelione, G T]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Owens, L A]] | ||
| + | [[Category: Seetharaman, J]] | ||
| + | [[Category: Tong, L]] | ||
| + | [[Category: Wang, D]] | ||
| + | [[Category: Xiao, R]] | ||
| + | [[Category: Blade-shaped beta-propeller]] | ||
| + | [[Category: Lyase]] | ||
| + | [[Category: Nesg]] | ||
| + | [[Category: PSI, Protein structure initiative]] | ||
Current revision
Crystal structure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199
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Categories: Large Structures | Vibpa | Abashidze, M | Acton, T B | Baran, M C | Forouhar, F | Hunt, J F | Janjua, H | Mao, L | Montelione, G T | Structural genomic | Owens, L A | Seetharaman, J | Tong, L | Wang, D | Xiao, R | Blade-shaped beta-propeller | Lyase | Nesg | PSI, Protein structure initiative
